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A survey of available tools and web servers for analysis of protein-protein interactions and interfaces.
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Inferring protein domain interactions from databases of interacting proteins.
Genome Biol. 2005;6(10):R89. doi: 10.1186/gb-2005-6-10-r89. Epub 2005 Sep 19.
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Oncogenic mutations and packing defects in protein structure.
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Internet resources for studying protein-protein interactions.
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Transient protein-protein interactions.
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Three-dimensional structure of p21 in the active conformation and analysis of an oncogenic mutant.
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AlphaSpace: Fragment-Centric Topographical Mapping To Target Protein-Protein Interaction Interfaces.
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Current Challenges and Opportunities in Designing Protein-Protein Interaction Targeted Drugs.
Adv Appl Bioinform Chem. 2020 Nov 12;13:11-25. doi: 10.2147/AABC.S235542. eCollection 2020.
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In silico structure-based approaches to discover protein-protein interaction-targeting drugs.
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AnkPlex: algorithmic structure for refinement of near-native ankyrin-protein docking.
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Intensification: A Resource for Amplifying Population-Genetic Signals with Protein Repeats.
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3did Update: domain-domain and peptide-mediated interactions of known 3D structure.
Nucleic Acids Res. 2009 Jan;37(Database issue):D300-4. doi: 10.1093/nar/gkn690. Epub 2008 Oct 25.
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Architectures and functional coverage of protein-protein interfaces.
J Mol Biol. 2008 Sep 5;381(3):785-802. doi: 10.1016/j.jmb.2008.04.071. Epub 2008 May 6.
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Using protein binding site prediction to improve protein docking.
Gene. 2008 Oct 1;422(1-2):14-21. doi: 10.1016/j.gene.2008.06.014. Epub 2008 Jun 14.
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KFC Server: interactive forecasting of protein interaction hot spots.
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W265-9. doi: 10.1093/nar/gkn346. Epub 2008 Jun 6.
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An in vivo map of the yeast protein interactome.
Science. 2008 Jun 13;320(5882):1465-70. doi: 10.1126/science.1153878. Epub 2008 May 8.
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MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions.
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W260-4. doi: 10.1093/nar/gkn185. Epub 2008 May 8.
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The RosettaDock server for local protein-protein docking.
Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W233-8. doi: 10.1093/nar/gkn216. Epub 2008 Apr 28.
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Characterization and prediction of protein interfaces to infer protein-protein interaction networks.
Curr Pharm Biotechnol. 2008 Apr;9(2):67-76. doi: 10.2174/138920108783955191.
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Alignment of non-covalent interactions at protein-protein interfaces.
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