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本文引用的文献

1
Probing Membrane Insertion Activity of Antimicrobial Polymers via Coarse-grain Molecular Dynamics.通过粗粒度分子动力学探究抗菌聚合物的膜插入活性
J Chem Theory Comput. 2006 May;2(3):649-655. doi: 10.1021/ct050298p.
2
Computationally designed peptide inhibitors of protein-protein interactions in membranes.膜中蛋白质-蛋白质相互作用的计算设计肽抑制剂
Biochemistry. 2008 Aug 19;47(33):8600-6. doi: 10.1021/bi800687h. Epub 2008 Jul 22.
3
Dissecting the membrane binding and insertion kinetics of a pHLIP peptide.剖析一种pH敏感脂质插入肽(pHLIP)的膜结合与插入动力学
Biochemistry. 2008 Aug 12;47(32):8250-2. doi: 10.1021/bi801103x. Epub 2008 Jul 18.
4
Peptide probes for protein transmembrane domains.用于蛋白质跨膜结构域的肽探针。
ACS Chem Biol. 2008 Jul 18;3(7):402-11. doi: 10.1021/cb800049w.
5
Role of hydrogen bonding and helix-lipid interactions in transmembrane helix association.氢键和螺旋-脂质相互作用在跨膜螺旋缔合中的作用。
J Am Chem Soc. 2008 May 21;130(20):6456-62. doi: 10.1021/ja711239h. Epub 2008 Apr 19.
6
Role of helix nucleation in the kinetics of binding of mastoparan X to phospholipid bilayers.螺旋成核在马蜂毒素X与磷脂双层结合动力学中的作用。
Biochemistry. 2007 Dec 4;46(48):13856-63. doi: 10.1021/bi7018404. Epub 2007 Nov 10.
7
The process of folding proteins into membranes: challenges and progress.蛋白质折叠进入膜的过程:挑战与进展。
Arch Biochem Biophys. 2008 Jan 1;469(1):46-66. doi: 10.1016/j.abb.2007.09.024. Epub 2007 Oct 22.
8
Use of the novel fluorescent amino acid p-cyanophenylalanine offers a direct probe of hydrophobic core formation during the folding of the N-terminal domain of the ribosomal protein L9 and provides evidence for two-state folding.新型荧光氨基酸对氰基苯丙氨酸的使用为核糖体蛋白L9 N端结构域折叠过程中疏水核心的形成提供了直接探针,并为两态折叠提供了证据。
Biochemistry. 2007 Oct 30;46(43):12308-13. doi: 10.1021/bi7010674. Epub 2007 Oct 9.
9
Coarse-grained free energy functions for studying protein conformational changes: a double-well network model.用于研究蛋白质构象变化的粗粒度自由能函数:双阱网络模型
Biophys J. 2007 Dec 1;93(11):3860-71. doi: 10.1529/biophysj.107.112060. Epub 2007 Aug 17.
10
Computational design of peptides that target transmembrane helices.靶向跨膜螺旋的肽的计算设计。
Science. 2007 Mar 30;315(5820):1817-22. doi: 10.1126/science.1136782.

使用两种荧光探针剖析一种模型膜肽的结合、插入和二聚化动力学。

Using two fluorescent probes to dissect the binding, insertion, and dimerization kinetics of a model membrane peptide.

作者信息

Tang Jia, Yin Hang, Qiu Jade, Tucker Matthew J, DeGrado William F, Gai Feng

机构信息

Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.

出版信息

J Am Chem Soc. 2009 Mar 25;131(11):3816-7. doi: 10.1021/ja809007f.

DOI:10.1021/ja809007f
PMID:19256494
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2667230/
Abstract

Helix-helix association within a membrane environment represents one of the fundamental processes in membrane protein folding. However, studying the kinetics of such processes has been difficult because most membrane proteins are insoluble in aqueous solution. Here we present a stopped-flow fluorescence study of the membrane-interaction kinetics of a designed, water-soluble transmembrane (TM) peptide, anti-alpha(IIb), which is known to dimerize in phospholipid bilayers. We show that by using two fluorescent amino acids, tryptophan and p-cyanophenylalanine, we are able to kinetically dissect distinct phases in the peptide-membrane interaction, representing membrane binding, membrane insertion, and TM helix-helix association. Our results further show that the last process occurs on a time scale of seconds, indicating that the association of two TM helices is an intrinsically slow event.

摘要

膜环境中的螺旋-螺旋缔合是膜蛋白折叠的基本过程之一。然而,研究此类过程的动力学一直很困难,因为大多数膜蛋白在水溶液中不溶。在此,我们展示了一项关于设计的水溶性跨膜(TM)肽抗α(IIb)的膜相互作用动力学的停流荧光研究,已知该肽在磷脂双层中会二聚化。我们表明,通过使用两种荧光氨基酸,色氨酸和对氰基苯丙氨酸,我们能够从动力学上剖析肽-膜相互作用中的不同阶段,这些阶段代表膜结合、膜插入以及跨膜螺旋-螺旋缔合。我们的结果进一步表明,最后一个过程发生在秒的时间尺度上,这表明两个跨膜螺旋的缔合是一个本质上缓慢的事件。