• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

压力对熵驱动自组装形成的结构的影响:蛋白质变性的例证

Pressure effects on structures formed by entropically driven self-assembly: illustration for denaturation of proteins.

作者信息

Yoshidome Takashi, Harano Yuichi, Kinoshita Masahiro

机构信息

Institute of Advanced Energy, Kyoto University, Uji, Kyoto 611-0011, Japan.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jan;79(1 Pt 1):011912. doi: 10.1103/PhysRevE.79.011912. Epub 2009 Jan 20.

DOI:10.1103/PhysRevE.79.011912
PMID:19257074
Abstract

We propose a general framework of pressure effects on the structures formed by the self-assembly of solute molecules immersed in solvent. The integral equation theory combined with the morphometric approach is employed for a hard-body model system. Our picture is that protein folding and ordered association of proteins are driven by the solvent entropy: At low pressures, the structures almost minimizing the excluded volume (EV) generated for solvent particles are stabilized. Such structures appear to be even more stabilized at high pressures. However, it is experimentally known that the native structure of a protein is unfolded, and ordered aggregates such as amyloid fibrils and actin filaments are dissociated by applying high pressures. This initially puzzling result can also be elucidated in terms of the solvent entropy. A clue to the basic mechanism is in the phenomenon that, when a large hard-sphere solute is immersed in small hard spheres forming the solvent, the small hard spheres are enriched near the solute and this enrichment becomes greater as the pressure increases. We argue that "attraction" is entropically provided between the solute surface and solvent particles, and the attraction becomes higher with rising pressure. Due to this effect, at high pressures, the structures possessing the largest possible solvent-accessible surface area together with sufficiently small EV become more stable in terms of the solvent entropy. To illustrate this concept, we perform an analysis of pressure denaturation of three different proteins. It is shown that only the structures that have the characteristics described above exhibit interesting behavior. They first become more destabilized relative to the native structure as the pressure increases, but beyond a threshold pressure the relative instability begins to decrease and they eventually become more stable than the native structure.

摘要

我们提出了一个关于压力对浸没在溶剂中的溶质分子自组装形成的结构的影响的通用框架。对于一个硬球模型系统,采用了积分方程理论与形态测量方法相结合的方式。我们的观点是,蛋白质折叠和蛋白质的有序缔合是由溶剂熵驱动的:在低压下,那些几乎能使溶剂粒子产生的排除体积(EV)最小化的结构会得到稳定。这种结构在高压下似乎会更加稳定。然而,实验表明,通过施加高压,蛋白质的天然结构会展开,而诸如淀粉样纤维和肌动蛋白丝等有序聚集体会解离。这个最初令人困惑的结果也可以从溶剂熵的角度来解释。基本机制的一个线索在于这样一种现象:当一个大的硬球溶质浸没在构成溶剂的小硬球中时,小硬球会在溶质附近富集,并且随着压力增加这种富集变得更加明显。我们认为溶质表面和溶剂粒子之间在熵的层面上存在“吸引力”,并且随着压力升高这种吸引力会增强。由于这种效应,在高压下,具有尽可能大的溶剂可及表面积且排除体积足够小的结构在溶剂熵方面会变得更稳定。为了说明这个概念,我们对三种不同的蛋白质进行了压力变性分析。结果表明,只有具有上述特征的结构才会表现出有趣的行为。随着压力增加,它们首先相对于天然结构变得更不稳定,但超过一个阈值压力后,相对不稳定性开始降低,最终它们会比天然结构更稳定。

相似文献

1
Pressure effects on structures formed by entropically driven self-assembly: illustration for denaturation of proteins.压力对熵驱动自组装形成的结构的影响:蛋白质变性的例证
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jan;79(1 Pt 1):011912. doi: 10.1103/PhysRevE.79.011912. Epub 2009 Jan 20.
2
Essential roles of protein-solvent many-body correlation in solvent-entropy effect on protein folding and denaturation: comparison between hard-sphere solvent and water.蛋白质-溶剂多体相关性在溶剂熵对蛋白质折叠和变性影响中的重要作用:硬球溶剂与水的比较
J Chem Phys. 2015 Apr 14;142(14):145103. doi: 10.1063/1.4917075.
3
Crucial importance of translational entropy of water in pressure denaturation of proteins.水的平移熵在蛋白质压力变性中的关键重要性。
J Chem Phys. 2006 Jul 14;125(2):24910. doi: 10.1063/1.2217011.
4
Entropic potential field formed for a linear-motor protein near a filament: Statistical-mechanical analyses using simple models.线性马达蛋白在纤维附近形成的熵势能场:使用简单模型的统计力学分析。
J Chem Phys. 2010 Jul 28;133(4):045103. doi: 10.1063/1.3462279.
5
Effects of sugars on the thermal stability of a protein.糖对蛋白质热稳定性的影响。
J Chem Phys. 2013 Jun 28;138(24):245101. doi: 10.1063/1.4811287.
6
Physical origin of hydrophobicity studied in terms of cold denaturation of proteins: comparison between water and simple fluids.从蛋白质的冷变性角度研究疏水性的物理起源:水和简单流体的比较。
Phys Chem Chem Phys. 2012 Nov 14;14(42):14554-66. doi: 10.1039/c2cp41738c. Epub 2012 Sep 26.
7
Molecular mechanism of pressure denaturation of proteins.蛋白质压力变性的分子机制。
J Chem Phys. 2008 Oct 14;129(14):145103. doi: 10.1063/1.2991176.
8
Water based on a molecular model behaves like a hard-sphere solvent for a nonpolar solute when the reference interaction site model and related theories are employed.当采用参考相互作用位点模型及相关理论时,基于分子模型的水对于非极性溶质表现得像一种硬球溶剂。
J Phys Condens Matter. 2016 Sep 1;28(34):344003. doi: 10.1088/0953-8984/28/34/344003. Epub 2016 Jul 1.
9
A theoretical analysis on characteristics of protein structures induced by cold denaturation.冷变性诱导的蛋白质结构特征的理论分析。
J Chem Phys. 2009 Nov 28;131(20):205102. doi: 10.1063/1.3265985.
10
Effects of monohydric alcohols and polyols on the thermal stability of a protein.一元醇和多元醇对蛋白质热稳定性的影响。
J Chem Phys. 2016 Mar 28;144(12):125105. doi: 10.1063/1.4944680.

引用本文的文献

1
Enhanced enzymatic activity exerted by a packed assembly of a single type of enzyme.单一类型酶的堆积组装所发挥的增强酶活性。
Chem Sci. 2020 Jul 27;11(34):9088-9100. doi: 10.1039/d0sc03498c.
2
A new theoretical approach to biological self-assembly.一种生物自组装的新理论方法。
Biophys Rev. 2013 Sep;5(3):283-293. doi: 10.1007/s12551-013-0100-8. Epub 2013 Feb 1.
3
Importance of water entropy in rotation mechanism of F-ATPase.水熵在F-ATP酶旋转机制中的重要性。
Biophysics (Nagoya-shi). 2011 Nov 18;7:113-122. doi: 10.2142/biophysics.7.113. eCollection 2011.
4
Single-molecule analysis of the rotation of F₁-ATPase under high hydrostatic pressure.单分子分析在高压下水解酶 F₁-ATPase 的旋转。
Biophys J. 2013 Oct 1;105(7):1635-42. doi: 10.1016/j.bpj.2013.08.036.
5
Importance of translational entropy of water in biological self-assembly processes like protein folding.水的平移熵在蛋白质折叠等生物自组装过程中的重要性。
Int J Mol Sci. 2009 Mar;10(3):1064-1080. doi: 10.3390/ijms10031064. Epub 2009 Mar 11.