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压力对熵驱动自组装形成的结构的影响:蛋白质变性的例证

Pressure effects on structures formed by entropically driven self-assembly: illustration for denaturation of proteins.

作者信息

Yoshidome Takashi, Harano Yuichi, Kinoshita Masahiro

机构信息

Institute of Advanced Energy, Kyoto University, Uji, Kyoto 611-0011, Japan.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jan;79(1 Pt 1):011912. doi: 10.1103/PhysRevE.79.011912. Epub 2009 Jan 20.

Abstract

We propose a general framework of pressure effects on the structures formed by the self-assembly of solute molecules immersed in solvent. The integral equation theory combined with the morphometric approach is employed for a hard-body model system. Our picture is that protein folding and ordered association of proteins are driven by the solvent entropy: At low pressures, the structures almost minimizing the excluded volume (EV) generated for solvent particles are stabilized. Such structures appear to be even more stabilized at high pressures. However, it is experimentally known that the native structure of a protein is unfolded, and ordered aggregates such as amyloid fibrils and actin filaments are dissociated by applying high pressures. This initially puzzling result can also be elucidated in terms of the solvent entropy. A clue to the basic mechanism is in the phenomenon that, when a large hard-sphere solute is immersed in small hard spheres forming the solvent, the small hard spheres are enriched near the solute and this enrichment becomes greater as the pressure increases. We argue that "attraction" is entropically provided between the solute surface and solvent particles, and the attraction becomes higher with rising pressure. Due to this effect, at high pressures, the structures possessing the largest possible solvent-accessible surface area together with sufficiently small EV become more stable in terms of the solvent entropy. To illustrate this concept, we perform an analysis of pressure denaturation of three different proteins. It is shown that only the structures that have the characteristics described above exhibit interesting behavior. They first become more destabilized relative to the native structure as the pressure increases, but beyond a threshold pressure the relative instability begins to decrease and they eventually become more stable than the native structure.

摘要

我们提出了一个关于压力对浸没在溶剂中的溶质分子自组装形成的结构的影响的通用框架。对于一个硬球模型系统,采用了积分方程理论与形态测量方法相结合的方式。我们的观点是,蛋白质折叠和蛋白质的有序缔合是由溶剂熵驱动的:在低压下,那些几乎能使溶剂粒子产生的排除体积(EV)最小化的结构会得到稳定。这种结构在高压下似乎会更加稳定。然而,实验表明,通过施加高压,蛋白质的天然结构会展开,而诸如淀粉样纤维和肌动蛋白丝等有序聚集体会解离。这个最初令人困惑的结果也可以从溶剂熵的角度来解释。基本机制的一个线索在于这样一种现象:当一个大的硬球溶质浸没在构成溶剂的小硬球中时,小硬球会在溶质附近富集,并且随着压力增加这种富集变得更加明显。我们认为溶质表面和溶剂粒子之间在熵的层面上存在“吸引力”,并且随着压力升高这种吸引力会增强。由于这种效应,在高压下,具有尽可能大的溶剂可及表面积且排除体积足够小的结构在溶剂熵方面会变得更稳定。为了说明这个概念,我们对三种不同的蛋白质进行了压力变性分析。结果表明,只有具有上述特征的结构才会表现出有趣的行为。随着压力增加,它们首先相对于天然结构变得更不稳定,但超过一个阈值压力后,相对不稳定性开始降低,最终它们会比天然结构更稳定。

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