微生物世界如何将进化从分子生物学的锡拉岩礁和现代综合理论的卡律布狄斯漩涡中拯救出来。
How the microbial world saved evolution from the scylla of molecular biology and the charybdis of the modern synthesis.
作者信息
Woese Carl R, Goldenfeld Nigel
机构信息
Institute for Genomic Biology and Department of Physics, 1206 West Gregory Drive, Urbana, IL 61801, USA.
出版信息
Microbiol Mol Biol Rev. 2009 Mar;73(1):14-21. doi: 10.1128/MMBR.00002-09.
Abstract
In this commentary, we provide a personal overview of the conceptual history of microbiology and molecular biology over the course of the last hundred years, emphasizing the relationship of these fields to the problem of evolution. We argue that despite their apparent success, all three reached an impasse that arose from the influence of dogmatic or overly narrow perspectives. Finally, we describe how recent developments in microbiology are realizing Beijerinck's vision of a field that is fully integrated with molecular biology, microbial ecology, thereby challenging and extending current thinking in evolution.
摘要
在这篇评论中，我们对过去百年间微生物学和分子生物学的概念史进行了个人视角的概述，着重阐述了这些领域与进化问题的关系。我们认为，尽管这三个领域表面上取得了成功，但都因教条主义或过于狭隘的观点影响而陷入了僵局。最后，我们描述了微生物学的最新进展如何正在实现贝杰林克所设想的一个与分子生物学、微生物生态学完全融合的领域，从而挑战并拓展了当前进化领域的思维。
相似文献
1
How the microbial world saved evolution from the scylla of molecular biology and the charybdis of the modern synthesis.微生物世界如何将进化从分子生物学的锡拉岩礁和现代综合理论的卡律布狄斯漩涡中拯救出来。
Microbiol Mol Biol Rev. 2009 Mar;73(1):14-21. doi: 10.1128/MMBR.00002-09.
2
The era of microbiology: a golden phoenix.微生物学时代：一只金色的凤凰。
Int Microbiol. 2006 Mar;9(1):1-7.
3
The nineteenth century roots of 'everything is everywhere'.“万物皆无处不在”的十九世纪根源。
Nat Rev Microbiol. 2007 Aug;5(8):647-51. doi: 10.1038/nrmicro1711.
4
Hybrids, pure cultures, and pure lines: from nineteenth-century biology to twentieth-century genetics.杂种、纯培养物与纯系：从19世纪生物学到20世纪遗传学
Stud Hist Philos Biol Biomed Sci. 2007 Dec;38(4):796-806. doi: 10.1016/j.shpsc.2007.09.012. Epub 2007 Nov 19.
5
Timeline: Neurospora: a model of model microbes.时间线：粗糙脉孢菌：模式微生物的一个模型
Nat Rev Genet. 2002 May;3(5):397-403. doi: 10.1038/nrg797.
6
The eighth day of discovery: molecular biology comes to chemical ecology.发现的第八天：分子生物学进入化学生态学。
J Chem Ecol. 2004 Dec;30(12):2327-33. doi: 10.1007/s10886-004-7939-x.
7
MMBR to highlight microbial evolution, diversity, and ecology in 2009.《微生物学与分子生物学评论》将在2009年重点关注微生物进化、多样性及生态学。
Microbiol Mol Biol Rev. 2009 Mar;73(1):13. doi: 10.1128/MMBR.00004-09.
8
'Everything is everywhere: but the environment selects': ubiquitous distribution and ecological determinism in microbial biogeography.“万物皆无处不在：但环境进行选择”：微生物生物地理学中的普遍分布与生态决定论
Stud Hist Philos Biol Biomed Sci. 2008 Sep;39(3):314-25. doi: 10.1016/j.shpsc.2008.06.005. Epub 2008 Aug 15.
9
[Modern evolutional developmental biology: mechanical and molecular genetic or phenotypic approaches?].[现代进化发育生物学：机械学和分子遗传学或表型方法？]
Ontogenez. 2010 Sep-Oct;41(5):332-9.
10
A bit of history.一段历史。
Microbiol Mol Biol Rev. 1999 Jun;63(2):263-4. doi: 10.1128/MMBR.63.2.263-264.1999.
引用本文的文献
1
Carl Woese: Still ahead of our time.卡尔·乌斯：仍然领先于我们这个时代。
mLife. 2022 Dec 14;1(4):359-367. doi: 10.1002/mlf2.12049. eCollection 2022 Dec.
2
The origin of genetic and metabolic systems: Evolutionary structuralinsights.遗传与代谢系统的起源：进化结构洞察
Heliyon. 2023 Mar 11;9(3):e14466. doi: 10.1016/j.heliyon.2023.e14466. eCollection 2023 Mar.
3
Archaea: A Goldmine for Molecular Biologists and Evolutionists.古生菌：分子生物学家和进化论者的宝库。
Methods Mol Biol. 2022;2522:1-21. doi: 10.1007/978-1-0716-2445-6_1.
4
How to Build a Biological Machine Using Engineering Materials and Methods.如何使用工程材料和方法构建生物机器。
Biomimetics (Basel). 2020 Jul 26;5(3):35. doi: 10.3390/biomimetics5030035.
5
Overcoming challenges and dogmas to understand the functions of pseudogenes.克服挑战和教条，理解假基因的功能。
Nat Rev Genet. 2020 Mar;21(3):191-201. doi: 10.1038/s41576-019-0196-1. Epub 2019 Dec 17.
6
Why an extended evolutionary synthesis is necessary.为何需要一个扩展的进化综合理论。
Interface Focus. 2017 Oct 6;7(5):20170015. doi: 10.1098/rsfs.2017.0015. Epub 2017 Aug 18.
7
Emergence of Life on Earth: A Physicochemical Jigsaw Puzzle.地球上生命的起源：一个物理化学拼图。
J Mol Evol. 2017 Jan;84(1):1-7. doi: 10.1007/s00239-016-9775-3. Epub 2016 Dec 19.
8
Cognition, Information Fields and Hologenomic Entanglement: Evolution in Light and Shadow.认知、信息场与全基因组纠缠：光影中的进化
Biology (Basel). 2016 May 21;5(2):21. doi: 10.3390/biology5020021.
9
Remembering Our Forebears: Albert Jan Kluyver and the Unity of Life.缅怀先辈：阿尔伯特·扬·克吕弗与生命的统一性
J Hist Biol. 2017 Feb;50(1):169-218. doi: 10.1007/s10739-016-9438-7.
10
Toward an evolutionary-predictive foundation for creativity : Commentary on "Human creativity, evolutionary algorithms, and predictive representations: The mechanics of thought trials" by Arne Dietrich and Hilde Haider, 2014 (Accepted pending minor revisions for publication in Psychonomic Bulletin & Review).迈向创造力的进化预测基础：对阿恩·迪特里希和希尔德·海德尔于2014年发表的《人类创造力、进化算法与预测表征：思维试验的机制》的评论（已被接受，待进行小的修订后发表于《心理onomic公告与评论》）
Psychon Bull Rev. 2016 Apr;23(2):632-9. doi: 10.3758/s13423-015-0925-1.
本文引用的文献
1
Gene recombination in Escherichia coli.大肠杆菌中的基因重组
Nature. 1946 Oct 19;158(4016):558. doi: 10.1038/158558a0.
2
STUDIES ON THE CHEMICAL NATURE OF THE SUBSTANCE INDUCING TRANSFORMATION OF PNEUMOCOCCAL TYPES : INDUCTION OF TRANSFORMATION BY A DESOXYRIBONUCLEIC ACID FRACTION ISOLATED FROM PNEUMOCOCCUS TYPE III.肺炎球菌型转变物质的化学性质研究：从 III 型肺炎球菌中分离出的脱氧核糖核酸片段诱导转化。
J Exp Med. 1944 Feb 1;79(2):137-58. doi: 10.1084/jem.79.2.137.
3
Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods.DNA转座子在哺乳动物和其他四足动物中的反复水平转移。
Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):17023-8. doi: 10.1073/pnas.0806548105. Epub 2008 Oct 20.
4
Horizontal gene transfer in eukaryotic evolution.真核生物进化中的水平基因转移
Nat Rev Genet. 2008 Aug;9(8):605-18. doi: 10.1038/nrg2386.
5
Massive horizontal gene transfer in bdelloid rotifers.蛭形轮虫中的大规模水平基因转移。
Science. 2008 May 30;320(5880):1210-3. doi: 10.1126/science.1156407.
6
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.从细胞内细菌到多细胞真核生物的广泛横向基因转移。
Science. 2007 Sep 21;317(5845):1753-6. doi: 10.1126/science.1142490. Epub 2007 Aug 30.
7
THE NATURE OF THE INTERMOLECULAR FORCES OPERATIVE IN BIOLOGICAL PROCESSES.生物过程中起作用的分子间力的本质。
Science. 1940 Jul 26;92(2378):77-9. doi: 10.1126/science.92.2378.77.
8
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts.海洋蓝藻病毒及其宿主中核心光系统II基因的流行情况与进化
PLoS Biol. 2006 Jul;4(8):e234. doi: 10.1371/journal.pbio.0040234.
9
CODES WITHOUT COMMAS.无逗号编码。
Proc Natl Acad Sci U S A. 1957 May 15;43(5):416-21. doi: 10.1073/pnas.43.5.416.
10
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea.海洋浮游细菌和古菌之间的视紫质侧向基因转移
Nature. 2006 Feb 16;439(7078):847-50. doi: 10.1038/nature04435.
Zotero 插件