Shinar Guy, Rabinowitz Joshua D, Alon Uri
Department of Molecular Cell Biology and Physics of Complex Systems, Weizmann Institute of Science, Rehovot, Israel.
PLoS Comput Biol. 2009 Mar;5(3):e1000297. doi: 10.1371/journal.pcbi.1000297. Epub 2009 Mar 6.
The glyoxylate bypass allows Escherichia coli to grow on carbon sources with only two carbons by bypassing the loss of carbons as CO(2) in the tricarboxylic acid cycle. The flux toward this bypass is regulated by the phosphorylation of the enzyme isocitrate dehydrogenase (IDH) by a bifunctional kinase-phosphatase called IDHKP. In this system, IDH activity has been found to be remarkably robust with respect to wide variations in the total IDH protein concentration. Here, we examine possible mechanisms to explain this robustness. Explanations in which IDHKP works simultaneously as a first-order kinase and as a zero-order phosphatase with a single IDH binding site are found to be inconsistent with robustness. Instead, we suggest a robust mechanism where both substrates bind the bifunctional enzyme to form a ternary complex.
乙醛酸循环支路使大肠杆菌能够利用仅含两个碳原子的碳源生长,这是通过绕过三羧酸循环中以二氧化碳形式损失的碳来实现的。朝向该循环支路的通量由一种名为异柠檬酸脱氢酶激酶-磷酸酶(IDHKP)的双功能激酶-磷酸酶对异柠檬酸脱氢酶(IDH)的磷酸化作用来调节。在这个系统中,已发现IDH活性在IDH总蛋白浓度的广泛变化方面具有显著的稳健性。在此,我们研究了可能解释这种稳健性的机制。发现IDHKP作为具有单个IDH结合位点的一级激酶和零级磷酸酶同时起作用的解释与稳健性不一致。相反,我们提出了一种稳健的机制,即两种底物都与双功能酶结合形成三元复合物。