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TFCat:小鼠和人类转录因子的精选目录。

TFCat: the curated catalog of mouse and human transcription factors.

作者信息

Fulton Debra L, Sundararajan Saravanan, Badis Gwenael, Hughes Timothy R, Wasserman Wyeth W, Roach Jared C, Sladek Rob

机构信息

Department of Medical Genetics, Centre for Molecular Medicine and Therapeutics, Child and Family Research Institute, University of British Columbia, Vancouver, Canada.

出版信息

Genome Biol. 2009;10(3):R29. doi: 10.1186/gb-2009-10-3-r29. Epub 2009 Mar 12.

DOI:10.1186/gb-2009-10-3-r29
PMID:19284633
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2691000/
Abstract

Unravelling regulatory programs governed by transcription factors (TFs) is fundamental to understanding biological systems. TFCat is a catalog of mouse and human TFs based on a reliable core collection of annotations obtained by expert review of the scientific literature. The collection, including proven and homology-based candidate TFs, is annotated within a function-based taxonomy and DNA-binding proteins are organized within a classification system. All data and user-feedback mechanisms are available at the TFCat portal (http://www.tfcat.ca).

摘要

解析由转录因子(TFs)调控的程序是理解生物系统的基础。TFCat是一个基于对科学文献进行专家评审而获得的可靠注释核心集合的小鼠和人类转录因子目录。该集合包括经过验证的和基于同源性的候选转录因子,在基于功能的分类法中进行注释,并且DNA结合蛋白在一个分类系统中进行组织。所有数据和用户反馈机制都可在TFCat门户网站(http://www.tfcat.ca)上获取。

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本文引用的文献

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TFCONES: a database of vertebrate transcription factor-encoding genes and their associated conserved noncoding elements.TFCONES:一个脊椎动物转录因子编码基因及其相关保守非编码元件的数据库。
BMC Genomics. 2007 Nov 29;8:441. doi: 10.1186/1471-2164-8-441.
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Induction of pluripotent stem cells from adult human fibroblasts by defined factors.通过特定因子将成人成纤维细胞诱导为多能干细胞。
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Transcription factor expression in lipopolysaccharide-activated peripheral-blood-derived mononuclear cells.脂多糖激活的外周血单核细胞中转录因子的表达
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Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome.人类基因组中细胞类型特异性和普遍存在的染色质调控结构的鉴定与表征。
PLoS Genet. 2007 Aug;3(8):e136. doi: 10.1371/journal.pgen.0030136. Epub 2007 Jul 2.
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CAMTAs: calmodulin-binding transcription activators from plants to human.钙调神经磷酸酶结合转录激活因子:从植物到人类
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