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来自普氏栖粪杆菌23木聚糖分解基因簇的β-D-木糖苷酶和双功能木聚糖酶-阿魏酸酯酶的生化分析

Biochemical analysis of a beta-D-xylosidase and a bifunctional xylanase-ferulic acid esterase from a xylanolytic gene cluster in Prevotella ruminicola 23.

作者信息

Dodd Dylan, Kocherginskaya Svetlana A, Spies M Ashley, Beery Kyle E, Abbas Charles A, Mackie Roderick I, Cann Isaac K O

机构信息

Department of Microbiology, University of Illinois, 1207 W Gregory Drive, Urbana, IL 61801, USA.

出版信息

J Bacteriol. 2009 May;191(10):3328-38. doi: 10.1128/JB.01628-08. Epub 2009 Mar 20.

Abstract

Prevotella ruminicola 23 is an obligate anaerobic bacterium in the phylum Bacteroidetes that contributes to hemicellulose utilization within the bovine rumen. To gain insight into the cellular machinery that this organism elaborates to degrade the hemicellulosic polymer xylan, we identified and cloned a gene predicted to encode a bifunctional xylanase-ferulic acid esterase (xyn10D-fae1A) and expressed the recombinant protein in Escherichia coli. Biochemical analysis of purified Xyn10D-Fae1A revealed that this protein possesses both endo-beta-1,4-xylanase and ferulic acid esterase activities. A putative glycoside hydrolase (GH) family 3 beta-D-glucosidase gene, with a novel PA14-like insertion sequence, was identified two genes downstream of xyn10D-fae1A. Biochemical analyses of the purified recombinant protein revealed that the putative beta-D-glucosidase has activity for pNP-beta-D-xylopyranoside, pNP-alpha-L-arabinofuranoside, and xylo-oligosaccharides; thus, the gene was designated xyl3A. When incubated in combination with Xyn10D-Fae1A, Xyl3A improved the release of xylose monomers from a hemicellulosic xylan substrate, suggesting that these two enzymes function synergistically to depolymerize xylan. Directed mutagenesis studies of Xyn10D-Fae1A mapped the catalytic sites for the two enzymatic functionalities to distinct regions within the polypeptide sequence. When a mutation was introduced into the putative catalytic site for the xylanase domain (E280S), the ferulic acid esterase activity increased threefold, which suggests that the two catalytic domains for Xyn10D-Fae1A are functionally coupled. Directed mutagenesis of conserved residues for Xyl3A resulted in attenuation of activity, which supports the assignment of Xyl3A as a GH family 3 beta-D-xylosidase.

摘要

瘤胃普雷沃氏菌23是拟杆菌门中的一种专性厌氧菌,有助于牛瘤胃内半纤维素的利用。为深入了解该生物体用于降解半纤维素聚合物木聚糖的细胞机制,我们鉴定并克隆了一个预测编码双功能木聚糖酶 - 阿魏酸酯酶(xyn10D - fae1A)的基因,并在大肠杆菌中表达了重组蛋白。对纯化的Xyn10D - Fae1A进行生化分析表明,该蛋白同时具有内切β - 1,4 - 木聚糖酶和阿魏酸酯酶活性。在xyn10D - fae1A下游两个基因处鉴定出一个推定的糖苷水解酶(GH)家族3β - D - 葡萄糖苷酶基因,其带有一个新的PA14样插入序列。对纯化的重组蛋白进行生化分析表明,推定的β - D - 葡萄糖苷酶对对硝基苯基 - β - D - 木吡喃糖苷、对硝基苯基 - α - L - 阿拉伯呋喃糖苷和木寡糖具有活性;因此,该基因被命名为xyl3A。当与Xyn10D - Fae1A一起孵育时,Xyl3A提高了半纤维素木聚糖底物中木糖单体的释放量,这表明这两种酶协同作用使木聚糖解聚。对Xyn10D - Fae1A的定向诱变研究将两种酶功能的催化位点定位到多肽序列内的不同区域。当在木聚糖酶结构域的推定催化位点(E280S)引入突变时,阿魏酸酯酶活性增加了三倍,这表明Xyn10D - Fae1A的两个催化结构域在功能上是耦合的。对Xyl3A保守残基的定向诱变导致活性减弱,这支持将Xyl3A指定为GH家族3β - D - 木糖苷酶。

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