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生物捕获键的理论方面。

Theoretical aspects of the biological catch bond.

作者信息

Prezhdo Oleg V, Pereverzev Yuriy V

机构信息

Department of Chemistry, University of Washington, Seattle, Washington 98195, USA.

出版信息

Acc Chem Res. 2009 Jun 16;42(6):693-703. doi: 10.1021/ar800202z.

DOI:10.1021/ar800202z
PMID:19331389
Abstract

The biological catch bond is fascinating and counterintuitive. When an external force is applied to a catch bond, either in vivo or in vitro, the bond resists breaking and becomes stronger instead. In contrast, ordinary slip bonds, which represent the vast majority of biological and chemical bonds, dissociate faster when subjected to a force. Catch-bond behavior was first predicted theoretically 20 years ago and has recently been experimentally observed in a number of protein receptor-ligand complexes. In this Account, we review the simplest physical-chemical models that lead to analytic expressions for bond lifetime, the concise universal representations of experimental data, and the explicit requirements for catch binding. The phenomenon has many manifestations: increased lifetime with growing constant force is its defining characteristic. If force increases with time, as in jump-ramp experiments, catch binding creates an additional maximum in the probability density of bond rupture force. The new maximum occurs at smaller forces than the slip-binding maximum, merging with the latter at a certain ramp rate in a process resembling a phase transition. If force is applied periodically, as in blood flows, catch-bond properties strongly depend on force frequency. Catch binding results from a complex landscape of receptor-ligand interactions. Bond lifetime can increase if force (i) prevents dissociation through the native pathway and drives the system over a higher energy barrier or (ii) alters protein conformations in a way that strengthens receptor-ligand binding. The bond deformations can be associated with allostery; force-induced conformational changes at one end of the protein propagate to the binding site at the other end. Surrounding water creates further exciting effects. Protein-water tension provides an additional barrier that can be responsible for significant drops in bond lifetimes observed at low forces relative to zero force. This strong dependence of bond properties on weak protein-water interactions may provide universal activation mechanisms in many biological systems and create new types of catch binding. Molecular dynamics simulations provide atomistic insights: the molecular view of bond dissociation gives a foundation for theoretical models and differentiates between alternative interpretations of experimental data. The number of known catch bonds is growing; analogs are found in enzyme catalysis, peptide translocation through nanopores, DNA unwinding, photoinduced dissociation of chemical bonds, and negative thermal expansion of bulk materials, for example. Finer force resolution will likely provide many more. Understanding the properties of catch bonds offers insight into the behavior of biological systems subjected to external perturbations in general.

摘要

生物捕获键引人入胜且有悖直觉。当在体内或体外对捕获键施加外力时,该键会抵抗断裂,反而变得更强。相比之下,代表绝大多数生物和化学键的普通滑动键在受力时解离得更快。捕获键行为在20年前首次从理论上被预测出来,最近在许多蛋白质受体 - 配体复合物中得到了实验观察。在本综述中,我们回顾了导致键寿命解析表达式的最简单物理化学模型、实验数据的简洁通用表示以及捕获结合的明确要求。这种现象有多种表现形式:随着恒定力增加键寿命是其决定性特征。如果力随时间增加,如在跳变 - 斜坡实验中,捕获结合会在键断裂力的概率密度中产生一个额外的最大值。这个新的最大值出现在比滑动结合最大值更小的力处,在类似于相变的过程中以一定的斜坡速率与后者合并。如果力是周期性施加的,如在血液流动中,捕获键的性质强烈依赖于力的频率。捕获结合源于受体 - 配体相互作用的复杂态势。如果力(i)通过天然途径阻止解离并驱使系统越过更高的能量屏障,或者(ii)以增强受体 - 配体结合的方式改变蛋白质构象,键寿命可能会增加。键的变形可能与变构有关;蛋白质一端的力诱导构象变化会传播到另一端的结合位点。周围的水产生了进一步令人兴奋的效应。蛋白质 - 水张力提供了一个额外的屏障,这可能是导致在相对于零力的低力下观察到键寿命显著下降的原因。键性质对弱蛋白质 - 水相互作用的这种强烈依赖性可能在许多生物系统中提供通用的激活机制,并创造新型的捕获结合。分子动力学模拟提供了原子层面的见解:键解离的分子观点为理论模型奠定了基础,并区分了对实验数据的不同解释。已知的捕获键数量在不断增加;例如,在酶催化、肽通过纳米孔的转运、DNA解旋、化学键的光致解离以及块状材料的负热膨胀中都发现了类似物。更精细的力分辨率可能会发现更多。总体而言,了解捕获键的性质有助于深入了解受到外部扰动的生物系统的行为。

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