• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

模块化多结构域蛋白RPA的结构与功能重塑的核磁共振分析

NMR analysis of the architecture and functional remodeling of a modular multidomain protein, RPA.

作者信息

Brosey Chris A, Chagot Marie-Eve, Ehrhardt Mark, Pretto Dalyir I, Weiner Brian E, Chazin Walter J

机构信息

Department of Biochemistry, and Center for Structural Biology, Vanderbilt University, Nashville, Tennessee 37232-8725, USA.

出版信息

J Am Chem Soc. 2009 May 13;131(18):6346-7. doi: 10.1021/ja9013634.

DOI:10.1021/ja9013634
PMID:19378948
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2711642/
Abstract

Modular proteins with multiple domains tethered by flexible linkers have variable global architectures. Using the eukaryotic ssDNA binding protein, Replication Protein A (RPA), we demonstrate that NMR spectroscopy is a powerful tool to characterize the remodeling of architecture in different functional states. The first direct evidence is obtained for the remodeling of RPA upon binding ssDNA, including an alteration in the availability of the RPA32N domain that may help explain its damage-dependent phosphorylation.

摘要

由柔性接头连接的具有多个结构域的模块化蛋白质具有可变的整体结构。利用真核单链DNA结合蛋白复制蛋白A(RPA),我们证明核磁共振波谱是表征不同功能状态下结构重塑的有力工具。我们获得了RPA结合单链DNA时重塑的首个直接证据,包括RPA32N结构域可用性的改变,这可能有助于解释其损伤依赖性磷酸化。

相似文献

1
NMR analysis of the architecture and functional remodeling of a modular multidomain protein, RPA.模块化多结构域蛋白RPA的结构与功能重塑的核磁共振分析
J Am Chem Soc. 2009 May 13;131(18):6346-7. doi: 10.1021/ja9013634.
2
Partial wrapping of single-stranded DNA by replication protein A and modulation through phosphorylation.复制蛋白 A 对单链 DNA 的部分包裹及其通过磷酸化的调节。
Nucleic Acids Res. 2024 Oct 28;52(19):11626-11640. doi: 10.1093/nar/gkae584.
3
Preparation of the modular multi-domain protein RPA for study by NMR spectroscopy.用于核磁共振波谱研究的模块化多结构域蛋白RPA的制备
Methods Mol Biol. 2012;831:181-95. doi: 10.1007/978-1-61779-480-3_11.
4
Generation of Fluorescent Versions of Saccharomyces cerevisiae RPA to Study the Conformational Dynamics of Its ssDNA-Binding Domains.生成荧光版酿酒酵母 RPA 以研究其 ssDNA 结合结构域的构象动力学。
Methods Mol Biol. 2021;2281:151-168. doi: 10.1007/978-1-0716-1290-3_9.
5
Sample preparation methods to analyze DNA-induced structural changes in replication protein A.用于分析复制蛋白A中DNA诱导的结构变化的样品制备方法。
Methods Mol Biol. 2012;922:101-22. doi: 10.1007/978-1-62703-032-8_6.
6
Functional dynamics in replication protein A DNA binding and protein recruitment domains.复制蛋白A的DNA结合和蛋白质募集结构域中的功能动力学
Structure. 2015 Jun 2;23(6):1028-38. doi: 10.1016/j.str.2015.04.008. Epub 2015 May 21.
7
Structural dynamics and single-stranded DNA binding activity of the three N-terminal domains of the large subunit of replication protein A from small angle X-ray scattering.从小角度 X 射线散射研究复制蛋白 A 大亚基的三个 N 端结构域的结构动力学和单链 DNA 结合活性。
Biochemistry. 2010 Apr 6;49(13):2880-9. doi: 10.1021/bi9019934.
8
Single-Molecule Analysis of Replication Protein A-DNA Interactions.复制蛋白A与DNA相互作用的单分子分析
Methods Enzymol. 2018;600:439-461. doi: 10.1016/bs.mie.2017.11.016.
9
Dynamics and selective remodeling of the DNA-binding domains of RPA.RPA 结合域的动力学和选择性重塑。
Nat Struct Mol Biol. 2019 Feb;26(2):129-136. doi: 10.1038/s41594-018-0181-y. Epub 2019 Feb 4.
10
Dynamic elements of replication protein A at the crossroads of DNA replication, recombination, and repair.复制蛋白 A 的动态元件在 DNA 复制、重组和修复的交汇点。
Crit Rev Biochem Mol Biol. 2020 Oct;55(5):482-507. doi: 10.1080/10409238.2020.1813070. Epub 2020 Aug 28.

引用本文的文献

1
Human hnRNPA1 reorganizes telomere-bound replication protein A.人 hnRNPA1 重组端粒结合复制蛋白 A。
Nucleic Acids Res. 2024 Nov 11;52(20):12422-12437. doi: 10.1093/nar/gkae834.
2
DNA-binding mechanism and evolution of replication protein A.复制蛋白 A 的 DNA 结合机制与进化。
Nat Commun. 2023 Apr 22;14(1):2326. doi: 10.1038/s41467-023-38048-w.
3
A disease-associated XPA allele interferes with TFIIH binding and primarily affects transcription-coupled nucleotide excision repair.一种与疾病相关的 XPA 等位基因干扰 TFIIH 的结合,主要影响转录偶联核苷酸切除修复。

本文引用的文献

1
Structure and dynamics of a ribosome-bound nascent chain by NMR spectroscopy.通过核磁共振光谱法研究核糖体结合新生肽链的结构与动力学
Proc Natl Acad Sci U S A. 2007 Oct 16;104(42):16516-21. doi: 10.1073/pnas.0704664104. Epub 2007 Oct 10.
2
The ribosomal stalk binds to translation factors IF2, EF-Tu, EF-G and RF3 via a conserved region of the L12 C-terminal domain.核糖体柄通过L12 C末端结构域的保守区域与翻译因子IF2、EF-Tu、EF-G和RF3结合。
J Mol Biol. 2007 Jan 12;365(2):468-79. doi: 10.1016/j.jmb.2006.10.025. Epub 2006 Oct 27.
3
A dynamic model for replication protein A (RPA) function in DNA processing pathways.
Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2208860120. doi: 10.1073/pnas.2208860120. Epub 2023 Mar 9.
4
Interdomain dynamics in human Replication Protein A regulates kinetics and thermodynamics of its binding to ssDNA.人体内复制蛋白 A 的域间动力学调节其与 ssDNA 结合的动力学和热力学。
PLoS One. 2023 Jan 19;18(1):e0278396. doi: 10.1371/journal.pone.0278396. eCollection 2023.
5
Two interaction surfaces between XPA and RPA organize the preincision complex in nucleotide excision repair.XPA 和 RPA 之间的两个相互作用界面在核苷酸切除修复中组织预切口复合物。
Proc Natl Acad Sci U S A. 2022 Aug 23;119(34):e2207408119. doi: 10.1073/pnas.2207408119. Epub 2022 Aug 15.
6
LAP2α preserves genome integrity through assisting RPA deposition on damaged chromatin.LAP2α 通过帮助 RPA 在受损染色质上沉积来维持基因组完整性。
Genome Biol. 2022 Feb 28;23(1):64. doi: 10.1186/s13059-022-02638-6.
7
Dynamic elements of replication protein A at the crossroads of DNA replication, recombination, and repair.复制蛋白 A 的动态元件在 DNA 复制、重组和修复的交汇点。
Crit Rev Biochem Mol Biol. 2020 Oct;55(5):482-507. doi: 10.1080/10409238.2020.1813070. Epub 2020 Aug 28.
8
XPA: DNA Repair Protein of Significant Clinical Importance.XPA:具有重要临床意义的 DNA 修复蛋白。
Int J Mol Sci. 2020 Mar 22;21(6):2182. doi: 10.3390/ijms21062182.
9
A key interaction with RPA orients XPA in NER complexes.与 RPA 的关键相互作用使 XPA 在 NER 复合物中定向。
Nucleic Acids Res. 2020 Feb 28;48(4):2173-2188. doi: 10.1093/nar/gkz1231.
10
Human replication protein A induces dynamic changes in single-stranded DNA and RNA structures.人源复制蛋白 A 诱导单链 DNA 和 RNA 结构的动态变化。
J Biol Chem. 2019 Sep 20;294(38):13915-13927. doi: 10.1074/jbc.RA119.009737. Epub 2019 Jul 26.
DNA加工途径中复制蛋白A(RPA)功能的动态模型。
Nucleic Acids Res. 2006;34(15):4126-37. doi: 10.1093/nar/gkl550. Epub 2006 Aug 25.
4
Functions of human replication protein A (RPA): from DNA replication to DNA damage and stress responses.人类复制蛋白A(RPA)的功能:从DNA复制到DNA损伤及应激反应
J Cell Physiol. 2006 Aug;208(2):267-73. doi: 10.1002/jcp.20622.
5
Direct NMR observation of a substrate protein bound to the chaperonin GroEL.直接核磁共振观察与伴侣蛋白GroEL结合的底物蛋白。
Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12748-53. doi: 10.1073/pnas.0505642102. Epub 2005 Aug 22.
6
Replication protein A phosphorylation and the cellular response to DNA damage.复制蛋白A磷酸化与细胞对DNA损伤的反应。
DNA Repair (Amst). 2004 Aug-Sep;3(8-9):1015-24. doi: 10.1016/j.dnarep.2004.03.028.
7
Structural mechanisms of DNA replication, repair, and recombination.DNA复制、修复和重组的结构机制。
J Biol Chem. 2004 Jul 23;279(30):30915-8. doi: 10.1074/jbc.R400015200. Epub 2004 Apr 16.
8
Independent and coordinated functions of replication protein A tandem high affinity single-stranded DNA binding domains.复制蛋白A串联高亲和力单链DNA结合结构域的独立与协同功能
J Biol Chem. 2003 Oct 17;278(42):41077-82. doi: 10.1074/jbc.M305871200. Epub 2003 Jul 24.
9
Quantitative NMR studies of high molecular weight proteins: application to domain orientation and ligand binding in the 723 residue enzyme malate synthase G.高分子量蛋白质的定量核磁共振研究:应用于723个残基的苹果酸合酶G的结构域取向和配体结合
J Mol Biol. 2003 Apr 11;327(5):1121-33. doi: 10.1016/s0022-2836(03)00238-9.
10
Solution NMR techniques for large molecular and supramolecular structures.用于大分子和超分子结构的溶液核磁共振技术。
J Am Chem Soc. 2002 Oct 16;124(41):12144-53. doi: 10.1021/ja026763z.