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生物分子结合速率并不能完整描述键的形成。

Biomolecule association rates do not provide a complete description of bond formation.

作者信息

Robert Philippe, Limozin Laurent, Pierres Anne, Bongrand Pierre

机构信息

Laboratory Adhesion et Inflammation, Institut national de santé et de recherche medicale (INSERM) UMR600, Parc Scientifique de Luminy, 13288 Marseille Cedex 09, France.

出版信息

Biophys J. 2009 Jun 3;96(11):4642-50. doi: 10.1016/j.bpj.2009.03.020.

Abstract

The efficiency of many cell-surface receptors is dependent on the rate of binding soluble or surface-attached ligands. Much effort was exerted to measure association rates between soluble molecules (three-dimensional k(on)) and, more recently, between surface-attached molecules (two-dimensional [2D] k(on)). According to a generally accepted assumption, the probability of bond formation between receptors and ligands is proportional to the first power of encounter duration. Here we provide new experimental evidence and review published data demonstrating that this simple assumption is not always warranted. Using as a model system the (2D) interaction between ICAM-1-coated surfaces and flowing microspheres coated with specific anti-ICAM-1 antibodies, we show that the probability of bond formation may scale as a power of encounter duration that is significantly higher than 1. Further, we show that experimental data may be accounted for by modeling ligand-receptor interaction as a displacement along a single path of a rough energy landscape. Under a wide range of conditions, the probability that an encounter of duration t resulted in bond formation varied as erfc[(t(0)/t)(1/2)], where t(0) was on the order of 10 ms. We conclude that the minimum contact time for bond formation may be a useful parameter to describe a ligand-receptor interaction, in addition to conventional association rates.

摘要

许多细胞表面受体的效率取决于与可溶性或表面附着配体的结合速率。人们付出了很多努力来测量可溶性分子之间的缔合速率(三维k(on)),以及最近表面附着分子之间的缔合速率(二维[2D]k(on))。根据一个普遍接受的假设,受体与配体之间形成键的概率与相遇持续时间的一次方成正比。在这里,我们提供了新的实验证据,并回顾了已发表的数据,表明这个简单的假设并不总是成立的。我们使用ICAM-1包被的表面与包被有特异性抗ICAM-1抗体的流动微球之间的(二维)相互作用作为模型系统,表明形成键的概率可能与相遇持续时间的幂成正比,该幂显著高于1。此外,我们表明,通过将配体-受体相互作用建模为沿着粗糙能量景观的单一路径的位移,可以解释实验数据。在广泛的条件下,持续时间为t的相遇导致形成键的概率随erfc[(t(0)/t)(1/2)]变化,其中t(0)约为10毫秒。我们得出结论,除了传统的缔合速率外,形成键的最短接触时间可能是描述配体-受体相互作用的一个有用参数。

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