• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种推广香农指数的新系统发育多样性测度及其在叶口蝠中的应用。

A new phylogenetic diversity measure generalizing the shannon index and its application to phyllostomid bats.

作者信息

Allen Benjamin, Kon Mark, Bar-Yam Yaneer

机构信息

Department of Mathematics and Statistics, Boston University, Boston, Massachusetts 02115, USA.

出版信息

Am Nat. 2009 Aug;174(2):236-43. doi: 10.1086/600101.

DOI:10.1086/600101
PMID:19548837
Abstract

Protecting biodiversity involves preserving the maximum number and abundance of species while giving special attention to species with unique genetic or morphological characteristics. In balancing different priorities, conservation policymakers may consider quantitative measures that compare diversity across ecological communities. To serve this purpose, a measure should increase or decrease with changes in community composition in a way that reflects what is valued, including species richness, evenness, and distinctness. However, counterintuitively, studies have shown that established indices, including those that emphasize average interspecies phylogenetic distance, may increase with the elimination of species. We introduce a new diversity index, the phylogenetic entropy, which generalizes in a natural way the Shannon index to incorporate species relatedness. Phylogenetic entropy favors communities in which highly distinct species are more abundant, but it does not advocate decreasing any species proportion below a community structure-dependent threshold. We contrast the behavior of multiple indices on a community of phyllostomid bats in the Selva Lacandona. The optimal genus distribution for phylogenetic entropy populates all genera in a linear relationship to their total phylogenetic distance to other genera. Two other indices favor eliminating 12 out of the 23 genera.

摘要

保护生物多样性涉及保护尽可能多的物种数量和丰度,同时特别关注具有独特遗传或形态特征的物种。在平衡不同的优先事项时,保护政策制定者可能会考虑比较不同生态群落多样性的量化措施。为了实现这一目的,一种措施应随着群落组成的变化而增加或减少,其方式应反映出所重视的方面,包括物种丰富度、均匀度和独特性。然而,与直觉相反的是,研究表明,包括那些强调平均种间系统发育距离的既定指数,可能会随着物种的消除而增加。我们引入了一种新的多样性指数——系统发育熵,它以自然的方式推广了香农指数,以纳入物种亲缘关系。系统发育熵有利于高度独特的物种更为丰富的群落,但它并不主张将任何物种比例降低到低于群落结构相关的阈值以下。我们对比了多个指数在塞尔瓦拉坎多纳叶口蝠群落中的表现。系统发育熵的最优属分布以与其他属的总系统发育距离呈线性关系的方式填充所有属。另外两个指数则倾向于从23个属中消除12个属。

相似文献

1
A new phylogenetic diversity measure generalizing the shannon index and its application to phyllostomid bats.一种推广香农指数的新系统发育多样性测度及其在叶口蝠中的应用。
Am Nat. 2009 Aug;174(2):236-43. doi: 10.1086/600101.
2
Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history.生态群落的系统发育多样性指标:整合物种丰富度、丰度和进化历史。
Ecol Lett. 2010 Jan;13(1):96-105. doi: 10.1111/j.1461-0248.2009.01405.x. Epub 2009 Nov 9.
3
Measuring biodiversity to explain community assembly: a unified approach.测度生物多样性以解释群落组装:一种统一的方法。
Biol Rev Camb Philos Soc. 2011 Nov;86(4):792-812. doi: 10.1111/j.1469-185X.2010.00171.x. Epub 2010 Dec 14.
4
Incorporating geographical and evolutionary rarity into conservation prioritization.将地理和进化稀有性纳入保护优先级制定中。
Conserv Biol. 2012 Aug;26(4):593-601. doi: 10.1111/j.1523-1739.2012.01845.x. Epub 2012 May 24.
5
Conservation biology of Malagasy strepsirhines: a phylogenetic approach.马达加斯加狐猴的保护生物学:一种系统发育方法。
Am J Phys Anthropol. 2006 Jun;130(2):238-53. doi: 10.1002/ajpa.20239.
6
Facilitation can increase the phylogenetic diversity of plant communities.促进作用可以增加植物群落的系统发育多样性。
Ecol Lett. 2007 Nov;10(11):1029-36. doi: 10.1111/j.1461-0248.2007.01100.x. Epub 2007 Aug 20.
7
Threatened species and the potential loss of phylogenetic diversity: conservation scenarios based on estimated extinction probabilities and phylogenetic risk analysis.受威胁物种与系统发育多样性的潜在丧失:基于估计灭绝概率和系统发育风险分析的保护情景
Conserv Biol. 2008 Dec;22(6):1461-70. doi: 10.1111/j.1523-1739.2008.01068.x. Epub 2008 Sep 15.
8
Contaminants reduce the richness and evenness of marine communities: a review and meta-analysis.污染物降低海洋群落的丰富度和均匀度:一项综述与荟萃分析
Environ Pollut. 2009 Jun;157(6):1745-52. doi: 10.1016/j.envpol.2009.02.017. Epub 2009 Mar 14.
9
[Sea star (Asteroidea) association structures on the rocky reef in the Gulf of California, Mexico].[墨西哥加利福尼亚湾岩礁上的海星(海盘车纲)共生结构]
Rev Biol Trop. 2005 Dec;53 Suppl 3:233-44.
10
[Effects of landscape and vegetation structure on the diversity of phyllostomid bats (Chiroptera: Phyllostomidae) in Oaxaca, Mexico].[景观和植被结构对墨西哥瓦哈卡叶口蝠(翼手目:叶口蝠科)多样性的影响]
Rev Biol Trop. 2014 Mar;62(1):217-39.

引用本文的文献

1
A Phylogenetic Host-Range Index Reveals Ecological Constraints in Phage Specialisation and Virulence.一种系统发育宿主范围指数揭示了噬菌体专业化和毒力中的生态限制。
Mol Ecol. 2025 Sep;34(18):e70052. doi: 10.1111/mec.70052. Epub 2025 Jul 28.
2
Utilisation of and propionic acid to improve silage quality of amaranth before and after wilting: fermentation quality, microbial communities, and their metabolic pathway.利用丙酸改善苋菜青贮前后的青贮质量:发酵品质、微生物群落及其代谢途径。
Front Microbiol. 2024 Jun 6;15:1415290. doi: 10.3389/fmicb.2024.1415290. eCollection 2024.
3
A new universal system of tree shape indices.
一种新的树形指数通用系统。
bioRxiv. 2024 Dec 17:2023.07.17.549219. doi: 10.1101/2023.07.17.549219.
4
Biodiversity survey and estimation for line-transect sampling.用于样线抽样的生物多样性调查与估计
Front Plant Sci. 2023 Nov 10;14:1159090. doi: 10.3389/fpls.2023.1159090. eCollection 2023.
5
Alcohol Consumption and the Diversity of the Oral Microbiome in Postmenopausal Women.饮酒与绝经后女性口腔微生物组多样性的关系。
J Nutr. 2024 Jan;154(1):202-212. doi: 10.1016/j.tjnut.2023.10.025. Epub 2023 Oct 31.
6
The relative importance of abiotic and biotic environmental conditions for taxonomic, phylogenetic, and functional diversity of spiders across spatial scales.在不同空间尺度上,非生物和生物环境条件对蜘蛛的分类学、系统发育和功能多样性的相对重要性。
Oecologia. 2023 Jun;202(2):261-273. doi: 10.1007/s00442-023-05383-0. Epub 2023 Jun 1.
7
Floral volatiles evoke partially similar responses in both florivores and pollinators and are correlated with non-volatile reward chemicals.花香挥发物在传粉者和食花动物中引起部分相似的反应,并与非挥发性奖励化学物质相关联。
Ann Bot. 2023 Oct 4;132(1):1-14. doi: 10.1093/aob/mcad064.
8
Current levels of microplastic pollution impact wild seabird gut microbiomes.当前的微塑料污染水平影响野生海鸟的肠道微生物组。
Nat Ecol Evol. 2023 May;7(5):698-706. doi: 10.1038/s41559-023-02013-z. Epub 2023 Mar 27.
9
Microbiome of rehydrated corn and sorghum grain silages treated with microbial inoculants in different fermentation periods.不同发酵时期添加微生物菌剂对再水合玉米和高粱青贮微生物组的影响。
Sci Rep. 2022 Oct 7;12(1):16864. doi: 10.1038/s41598-022-21461-4.
10
specificity: an R package for analysis of feature specificity to environmental and higher dimensional variables, applied to microbiome species data.特异性:一个用于分析特征对环境变量和高维变量特异性的R包,应用于微生物群落物种数据。
Environ Microbiome. 2022 Jun 25;17(1):34. doi: 10.1186/s40793-022-00426-0.