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起源于太平洋火环及其他构造活跃地区的类群成员以及新属的描述。

class members originating at sites within the Pacific Ring of Fire and other tectonically active locations and description of the novel genus '.

作者信息

Arisan Dilanaz, Moya-Beltrán Ana, Rojas-Villalobos Camila, Issotta Francisco, Castro Matías, Ulloa Ricardo, Chiacchiarini Patricia A, Díez Beatriz, Martín Alberto J M, Ñancucheo Iván, Giaveno Alejandra, Johnson D Barrie, Quatrini Raquel

机构信息

Facultad de Medicina y Ciencia, Universidad San Sebastián, Santiago, Chile.

Centro Científico y Tecnológico de Excelencia Ciencia & Vida, Santiago, Chile.

出版信息

Front Microbiol. 2024 Apr 3;15:1360268. doi: 10.3389/fmicb.2024.1360268. eCollection 2024.

Abstract

Recent studies have expanded the genomic contours of the , highlighting important lacunae in our comprehension of the phylogenetic space occupied by certain lineages of the class. One such lineage is ', a novel genus-level taxon, represented by ' VAN18-1 as its type species, along with two other uncultivated metagenome-assembled genomes (MAGs) originating from geothermally active sites across the Pacific Ring of Fire. In this study, we investigate the genetic and genomic diversity, and the distribution patterns of several uncharacterized class strains and sequence clones, which are ascribed to the same 16S rRNA gene sequence clade. By digging deeper into this data and contributing to novel MAGs emerging from environmental studies in tectonically active locations, the description of this novel genus has been consolidated. Using state-of-the-art genomic taxonomy methods, we added to already recognized taxa, an additional four novel () species, including ' Igneacidithiobacillus chanchocoensis' (mCHCt20-1), ' (S30A2), ' Igneacidithiobacillus taupoensis' (TVZ-G3 ), and ' Igneacidithiobacillus waiarikiensis' (TVZ-G4 ). Analysis of published data on the isolation, enrichment, cultivation, and preliminary microbiological characterization of several of these unassigned or misassigned strains, along with the type species of the genus, plus the recoverable environmental data from metagenomic studies, allowed us to identify habitat preferences of these taxa. Commonalities and lineage-specific adaptations of the seven species of the genus were derived from pangenome analysis and comparative genomic metabolic reconstruction. The findings emerging from this study lay the groundwork for further research on the ecology, evolution, and biotechnological potential of the novel genus ''.

摘要

最近的研究扩展了[具体类群]的基因组轮廓,凸显了我们在理解该类群某些谱系所占据的系统发育空间方面存在的重要空白。其中一个这样的谱系是[具体名称],这是一个新的属级分类单元,以[具体名称]VAN18 - 1作为其模式种,还有另外两个未培养的宏基因组组装基因组(MAGs),它们源自环太平洋火山带各地的地热活跃地点。在本研究中,我们调查了几个未表征的[具体类群]菌株和序列克隆的遗传和基因组多样性以及分布模式,这些菌株和克隆属于同一个16S rRNA基因序列分支。通过更深入地挖掘这些数据,并为从构造活跃地区的环境研究中产生的新MAGs做出贡献,这个新属的描述得到了巩固。使用最先进的基因组分类方法,我们在已被认可的分类单元中增加了另外四个新的[具体类群]物种,包括[具体名称]Igneacidithiobacillus chanchocoensis(mCHCt20 - 1)、[具体名称](S30A2)、[具体名称]Igneacidithiobacillus taupoensis(TVZ - G3 )和[具体名称]Igneacidithiobacillus waiarikiensis(TVZ - G4 )。对这些未指定或错误指定菌株中的几个以及该属的模式种的已发表分离、富集、培养和初步微生物学特征数据进行分析,再加上宏基因组研究中可获取的环境数据,使我们能够确定这些分类单元的栖息地偏好。通过泛基因组分析和比较基因组代谢重建得出了该属七个物种的共性和谱系特异性适应性。本研究得出的结果为进一步研究新属[具体名称]的生态学、进化和生物技术潜力奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/72de/11021618/49c39f8060a8/fmicb-15-1360268-g001.jpg

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