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用于下一代DNA测序的虚拟终止子核苷酸

Virtual terminator nucleotides for next-generation DNA sequencing.

作者信息

Bowers Jayson, Mitchell Judith, Beer Eric, Buzby Philip R, Causey Marie, Efcavitch J William, Jarosz Mirna, Krzymanska-Olejnik Edyta, Kung Li, Lipson Doron, Lowman Geoffrey M, Marappan Subramanian, McInerney Peter, Platt Adam, Roy Atanu, Siddiqi Suhaib M, Steinmann Kathleen, Thompson John F

机构信息

Helicos BioSciences Corporation, Cambridge, Massachusetts, USA.

出版信息

Nat Methods. 2009 Aug;6(8):593-5. doi: 10.1038/nmeth.1354. Epub 2009 Jul 20.

DOI:10.1038/nmeth.1354
PMID:19620973
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2719685/
Abstract

We synthesized reversible terminators with tethered inhibitors for next-generation sequencing. These were efficiently incorporated with high fidelity while preventing incorporation of additional nucleotides, and we used them to sequence canine bacterial artificial chromosomes in a single-molecule system that provided even coverage for over 99% of the region sequenced. This single-molecule approach generated high-quality sequence data without the need for target amplification and thus avoided concomitant biases.

摘要

我们合成了带有连接抑制剂的可逆终止子用于下一代测序。这些可逆终止子能够高效且高保真地掺入,同时阻止额外核苷酸的掺入,并且我们使用它们在单分子系统中对犬类细菌人工染色体进行测序,该系统为超过99%的测序区域提供了均匀覆盖。这种单分子方法无需目标扩增即可生成高质量的序列数据,从而避免了相关的偏差。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/567e/2719685/312b5837d621/nihms127350f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/567e/2719685/c5ebb4d8cb38/nihms127350f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/567e/2719685/312b5837d621/nihms127350f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/567e/2719685/c5ebb4d8cb38/nihms127350f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/567e/2719685/312b5837d621/nihms127350f2.jpg

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本文引用的文献

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Nature. 2008 Nov 6;456(7218):53-9. doi: 10.1038/nature07517.
2
What would you do if you could sequence everything?如果你能对所有事物进行测序,你会怎么做?
Nat Biotechnol. 2008 Oct;26(10):1125-33. doi: 10.1038/nbt1494.
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Substantial biases in ultra-short read data sets from high-throughput DNA sequencing.来自高通量DNA测序的超短读长数据集存在大量偏差。
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A Two-color Single-molecule Sequencing Platform and Its Clinical Applications.双色单分子测序平台及其临床应用。
Genomics Proteomics Bioinformatics. 2024 May 9;22(1). doi: 10.1093/gpbjnl/qzae006.
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Towards the controlled enzymatic synthesis of LNA containing oligonucleotides.迈向含锁核酸的寡核苷酸的可控酶促合成。
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DNA synthesis technologies to close the gene writing gap.用于弥合基因编写差距的DNA合成技术。
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The New Omics Era into Systems Approaches: What Is the Importance of Separation Techniques?新组学时代进入系统方法:分离技术的重要性是什么?
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Development of a sequencing system for spatial decoding of DNA barcode molecules at single-molecule resolution.用于在单分子分辨率下对DNA条形码分子进行空间解码的测序系统的开发。
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Impact of Nucleic Acid Sequencing on Viroid Biology.核酸测序对类病毒生物学的影响。
Int J Mol Sci. 2020 Aug 1;21(15):5532. doi: 10.3390/ijms21155532.
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