Yin Yanbin, Huang Jinling, Xu Ying
Computational System Biology Lab, Department of Biochemistry and Molecular Biology, Institute of Bioinformatics, University of Georgia, BioEnergy Science Center, USA.
BMC Plant Biol. 2009 Jul 31;9:99. doi: 10.1186/1471-2229-9-99.
The cellulose synthase superfamily has been classified into nine cellulose synthase-like (Csl) families and one cellulose synthase (CesA) family. The Csl families have been proposed to be involved in the synthesis of the backbones of hemicelluloses of plant cell walls. With 17 plant and algal genomes fully sequenced, we sought to conduct a genome-wide and systematic investigation of this superfamily through in-depth phylogenetic analyses.
A single-copy gene is found in the six chlorophyte green algae, which is most closely related to the CslA and CslC families that are present in the seven land plants investigated in our analyses. Six proteins from poplar, grape and sorghum form a distinct family (CslJ), providing further support for the conclusions from two recent studies. CslB/E/G/H/J families have evolved significantly more rapidly than their widely distributed relatives, and tend to have intragenomic duplications, in particular in the grape genome.
Our data suggest that the CslA and CslC families originated through an ancient gene duplication event in land plants. We speculate that the single-copy Csl gene in green algae may encode a mannan synthase. We confirm that the rest of the Csl families have a different evolutionary origin than CslA and CslC, and have proposed a model for the divergence order among them. Our study provides new insights about the evolution of this important gene family in plants.
纤维素合酶超家族已被分为九个类纤维素合酶(Csl)家族和一个纤维素合酶(CesA)家族。有人提出Csl家族参与植物细胞壁半纤维素主链的合成。随着17种植物和藻类基因组的全序列测定完成,我们试图通过深入的系统发育分析对这个超家族进行全基因组范围的系统研究。
在六种绿藻中发现了一个单拷贝基因,它与我们分析中所研究的七种陆地植物中存在的CslA和CslC家族关系最为密切。来自杨树、葡萄和高粱的六种蛋白质形成了一个独特的家族(CslJ),为最近两项研究的结论提供了进一步支持。CslB/E/G/H/J家族的进化速度明显快于其广泛分布的亲属,并且倾向于有基因组内重复,特别是在葡萄基因组中。
我们的数据表明CslA和CslC家族起源于陆地植物中的一次古老基因复制事件。我们推测绿藻中的单拷贝Csl基因可能编码一种甘露聚糖合酶。我们证实Csl家族的其他成员与CslA和CslC有不同的进化起源,并提出了它们之间分歧顺序的模型。我们的研究为这个重要基因家族在植物中的进化提供了新的见解。