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南海海洋沉积物中分离到的一株海洋放线菌 Arenibacter nanhaiticus sp. nov.

Arenibacter nanhaiticus sp. nov., isolated from marine sediment of the South China Sea.

机构信息

Key Laboratory of Marine Biogenetic Resources, The Third Institute of Oceanography, State Oceanic Administration, Xiamen 361005, PR China.

出版信息

Int J Syst Evol Microbiol. 2010 Jan;60(Pt 1):78-83. doi: 10.1099/ijs.0.008573-0. Epub 2009 Jul 31.

DOI:10.1099/ijs.0.008573-0
PMID:19648347
Abstract

An aerobic, Gram-stain-negative, rod-shaped bacterial isolate, strain NH36A(T), was isolated from a sandy sediment sample from the South China Sea. Colonies of the isolate were dark orange on M2 agar. Optimal growth was observed at pH 7.0-8.5, 30 degrees C and in the presence of 0.5-4.0 % (w/v) NaCl. The major fatty acids were C(15 : 0), iso-C(15 : 0), anteiso-C(15 : 0), iso-C(15 : 1), iso-C(15 : 0) 3-OH, iso-C(17 : 0) 3-OH and summed feature 3 (comprising iso-C(15 : 0) 2-OH and/or C(16 : 1)omega7c). The DNA G+C content was 38.9 mol%. 16S rRNA gene sequence analysis revealed that strain NH36A(T) was most closely related to members of the genus Arenibacter, exhibiting 94.3-96.2 % sequence similarity to the type strains of Arenibacter species. On the basis of phenotypic, chemotaxonomic and phylogenetic data, this organism should be classified as a representative of a novel species in the genus Arenibacter. The name Arenibacter nanhaiticus sp. nov. is proposed and the type strain is NH36A(T) (=LMG 24842(T)=CCTCC AB 208315(T)=MCCC 1A04137(T)).

摘要

一株好氧、革兰氏阴性、杆状的细菌分离株,菌株 NH36A(T),是从南海的沙质沉积物样本中分离出来的。该分离株的菌落呈暗橙色,在 M2 琼脂上。最佳生长条件为 pH7.0-8.5、30°C 和 0.5-4.0%(w/v)NaCl。主要脂肪酸为 C(15:0)、iso-C(15:0)、anteiso-C(15:0)、iso-C(15:1)、iso-C(15:0)3-OH、iso-C(17:0)3-OH 和 summed feature 3(包括 iso-C(15:0)2-OH 和/或 C(16:1)omega7c)。DNA G+C 含量为 38.9mol%。16S rRNA 基因序列分析表明,菌株 NH36A(T)与 Arenibacter 属的成员最为密切相关,与 Arenibacter 属的模式种的序列相似性为 94.3-96.2%。基于表型、化学分类和系统发育数据,该生物应被归类为 Arenibacter 属的一个新种的代表。建议采用 Arenibacter nanhaiticus sp. nov. 这一名称,其模式菌株为 NH36A(T)=LMG 24842(T)=CCTCC AB 208315(T)=MCCC 1A04137(T)。

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