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基因组序列信息揭示的海洋中弧菌生态学——综述

What genomic sequence information has revealed about Vibrio ecology in the ocean--a review.

作者信息

Grimes Darrell Jay, Johnson Crystal N, Dillon Kevin S, Flowers Adrienne R, Noriea Nicholas F, Berutti Tracy

机构信息

Department of Coastal Sciences, Gulf Coast Research Laboratory, The University of Southern Mississippi, 703 East Beach Drive, Ocean Springs, MS 39564, USA.

出版信息

Microb Ecol. 2009 Oct;58(3):447-60. doi: 10.1007/s00248-009-9578-9.

Abstract

To date, the genomes of eight Vibrio strains representing six species and three human pathogens have been fully sequenced and reported. This review compares genomic information revealed from these sequencing efforts and what we can infer about Vibrio biology and ecology from this and related genomic information. The focus of the review is on those attributes that allow the Vibrios to survive and even proliferate in their ocean habitats, which include seawater, plankton, invertebrates, fish, marine mammals, plants, man-made structures (surfaces), and particulate matter. Areas covered include general information about the eight genomes, each of which is distributed over two chromosomes; a discussion of expected and unusual genes found; attachment sites and mechanisms; utilization of particulate and dissolved organic matter; and conclusions.

摘要

迄今为止,代表六种弧菌属物种和三种人类病原体的八个弧菌菌株的基因组已全部测序并公布。本综述比较了这些测序工作所揭示的基因组信息,以及我们从这些信息和相关基因组信息中可以推断出的弧菌生物学和生态学信息。综述重点关注那些使弧菌能够在其海洋栖息地(包括海水、浮游生物、无脊椎动物、鱼类、海洋哺乳动物、植物、人造结构(表面)和颗粒物)中生存甚至增殖的特性。涵盖的领域包括关于这八个基因组的一般信息(每个基因组分布在两条染色体上);对已发现的预期基因和异常基因的讨论;附着位点和机制;颗粒状和溶解性有机物的利用;以及结论。

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