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估算高分子量蛋白质中甲基与相邻不稳定质子自旋之间的交叉弛豫率。

Estimating cross-relaxation rates between methyl and neighboring labile proton spins in high molecular weight proteins.

作者信息

Tugarinov Vitali, Clore G Marius

机构信息

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, 20892-0520, USA.

出版信息

J Biomol NMR. 2025 May 25. doi: 10.1007/s10858-025-00469-8.

Abstract

We show that water saturation leads to deleterious losses in sensitivity of methyl signals in selectively methyl-[CH]-labeled protein samples of high molecular weight proteins dissolved in HO. These losses arise from efficient cross-relaxation between methyl protons and proximal labile protons in the protein structure. A phenomenological model for analysis of methyl intensity decay profiles that involves exchange saturation transfer of magnetization from localized proton spins of water to various labile groups in the protein structure that, in turn, efficiently cross-relax with protons of methyl groups, is described. Analysis of methyl intensity decay profiles with this model allows cross-relaxation rates (σ) between methyl and labile protons to be determined and permits identification of methyl sites in close proximity to labile groups in the protein structure.

摘要

我们表明,在溶解于重水的高分子量蛋白质的选择性甲基-[CH]标记蛋白质样品中,水饱和会导致甲基信号灵敏度的有害损失。这些损失源于蛋白质结构中甲基质子与近端不稳定质子之间的有效交叉弛豫。本文描述了一种用于分析甲基强度衰减曲线的唯象模型,该模型涉及从水的局域质子自旋到蛋白质结构中各种不稳定基团的磁化交换饱和转移,这些不稳定基团又与甲基质子有效交叉弛豫。用该模型分析甲基强度衰减曲线可以确定甲基与不稳定质子之间的交叉弛豫率(σ),并允许识别蛋白质结构中与不稳定基团紧邻的甲基位点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc5f/12427129/03534a68dc98/nihms-2108753-f0001.jpg

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