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阿来霉素在类脂膜中的聚集。

Alamethicin aggregation in lipid membranes.

机构信息

Department of Physics, Carnegie Mellon University, Pittsburgh, PA 15213, USA.

出版信息

J Membr Biol. 2009 Sep;231(1):11-27. doi: 10.1007/s00232-009-9199-8. Epub 2009 Sep 30.

Abstract

X-ray scattering features induced by aggregates of alamethicin (Alm) were obtained in oriented stacks of model membranes of DOPC(diC18:1PC) and diC22:1PC. The first feature obtained near full hydration was Bragg rod in-plane scattering near 0.11 A(-1) in DOPC and near 0.08 A(-1) in diC22:1PC at a 1:10 Alm:lipid ratio. This feature is interpreted as bundles consisting of n Alm monomers in a barrel-stave configuration surrounding a water pore. Fitting the scattering data to previously published molecular dynamics simulations indicates that the number of peptides per bundle is n = 6 in DOPC and n >or= 9 in diC22:1PC. The larger bundle size in diC22:1PC is explained by hydrophobic mismatch of Alm with the thicker bilayer. A second diffuse scattering peak located at q(r) approximately 0.7 A(-1) is obtained for both DOPC and diC22:1PC at several peptide concentrations. Theoretical calculations indicate that this peak cannot be caused by the Alm bundle structure. Instead, we interpret it as being due to two-dimensional hexagonally packed clusters in equilibrium with Alm bundles. As the relative humidity was reduced, interactions between Alm in neighboring bilayers produced more peaks with three-dimensional crystallographic character that do not index with the conventional hexagonal space groups.

摘要

在 DOPC(二硬脂酰基磷脂酰胆碱)和 diC22:1PC 的定向堆积模型膜中获得了由短杆菌肽 A(Alm)聚集体引起的 X 射线散射特征。在接近完全水合的情况下,首先在 DOPC 中获得了 Bragg 杆面内散射,在 1:10 Alm:脂质比时,其位置在 0.11 A(-1)附近,在 diC22:1PC 中位置在 0.08 A(-1)附近。该特征被解释为由桶状结构中 n 个 Alm 单体组成的束,其周围有一个水孔。将散射数据拟合到先前发表的分子动力学模拟表明,每个束中的肽数量在 DOPC 中为 n = 6,在 diC22:1PC 中为 n >or= 9。在 diC22:1PC 中较大的束尺寸是由于 Alm 与较厚的双层之间的疏水性不匹配造成的。在几个肽浓度下,DOPC 和 diC22:1PC 都获得了位于 q(r)约 0.7 A(-1)处的第二个漫散射峰。理论计算表明,该峰不能归因于 Alm 束结构。相反,我们将其解释为与 Alm 束处于平衡状态的二维六边形堆积的簇。随着相对湿度的降低,相邻双层中 Alm 之间的相互作用产生了更多具有三维晶体学特征的峰,这些峰无法用常规的六边形空间群进行索引。

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Alamethicin aggregation in lipid membranes.阿来霉素在类脂膜中的聚集。
J Membr Biol. 2009 Sep;231(1):11-27. doi: 10.1007/s00232-009-9199-8. Epub 2009 Sep 30.

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