Molecular evolution of the Escherichia coli chromosome. III. Clonal frames.
作者信息
Milkman R, Bridges M M
机构信息
Department of Biology, University of Iowa, Iowa City 52242.
出版信息
Genetics. 1990 Nov;126(3):505-17. doi: 10.1093/genetics/126.3.505.
Abstract
PCR fragments, 1500-bp, from 15 previously sequenced regions in the Escherichia coli chromosome have been compared by restriction analysis in a large set of wild (ECOR) strains. Prior published observations of segmental clonality are confirmed: each of several sequence types is shared by a number of strains. The rate of recombinational replacement and the average size of the replacements are estimated in a set of closely related strains in which a clonal frame is dotted with occasional stretches of DNA belonging to other clones. A clonal hierarchy is described. Some new comparative sequencing data are presented.
摘要
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本文引用的文献
1
The complete nucleotide sequence of the tryptophan operon of Escherichia coli.
Nucleic Acids Res. 1981 Dec 21;9(24):6647-68. doi: 10.1093/nar/9.24.6647.
2
Clustered third-base substitutions among wild strains of Escherichia coli.
Science. 1983 Jul 22;221(4608):378-80. doi: 10.1126/science.6346486.
3
Electrophoretic variation in Escherichia coli from natural sources.
Science. 1973 Dec 7;182(4116):1024-6. doi: 10.1126/science.182.4116.1024.
4
Confidence interval for the number of selectively neutral amino acid polymorphisms.
Proc Natl Acad Sci U S A. 1987 Sep;84(17):6225-8. doi: 10.1073/pnas.84.17.6225.
5
DNA sequencing with Thermus aquaticus DNA polymerase and direct sequencing of polymerase chain reaction-amplified DNA.
Proc Natl Acad Sci U S A. 1988 Dec;85(24):9436-40. doi: 10.1073/pnas.85.24.9436.
6
Generation of single-stranded DNA by the polymerase chain reaction and its application to direct sequencing of the HLA-DQA locus.
Proc Natl Acad Sci U S A. 1988 Oct;85(20):7652-6. doi: 10.1073/pnas.85.20.7652.
7
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Genetic exchange among natural isolates of bacteria: recombination within the phoA gene of Escherichia coli.
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9
The origin of mutants.
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10
Complete nucleotide sequence of the topA gene encoding Escherichia coli DNA topoisomerase I.
J Mol Biol. 1986 Oct 5;191(3):321-31. doi: 10.1016/0022-2836(86)90129-4.
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