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黄素细胞色素b(2)中的结构域间接触:突变分析

Interdomain contacts in flavocytochrome b(2), a mutational analysis.

作者信息

Lê K H Diêp, Boussac Alain, Frangioni Bettina, Léger Christophe, Lederer Florence

机构信息

Laboratoire d'Enzymologie et Biochimie Structurales, CNRS UPR9063, 91198 Gif-sur-Yvette Cedex, France.

出版信息

Biochemistry. 2009 Nov 17;48(45):10803-9. doi: 10.1021/bi901301r.

DOI:10.1021/bi901301r
PMID:19821613
Abstract

Each flavocytochrome b(2) (l-lactate cytochrome c oxidoreductase) subunit consists of an N-terminal cytochrome domain and a C-terminal flavodehydrogenase (FDH) domain. In the enzyme crystal structure, only two heme domains are visible per enzyme tetramer, because of the mobility of the other two heme domains relative to the FDH domains. Evidence was subsequently provided that this mobility also exists in solution. Numerous kinetic studies showed that, during the catalytic cycle, electrons are transferred one by one from the reduced flavin to heme b(2) in the same subunit. In previous work, we provided evidence that a monoclonal antibody that abolishes flavin to heme electron transfer uses part of the interdomain interface for binding to its antigen, the native heme domain. In this work, we use a number of heme domain side chain substitutions in and around the interface to probe their effect on flavin to heme electron transfer. Using steady-state and pre-steady-state kinetics, as well as redox potential determinations and EPR measurements, we define several hydrophobic interactions and van der Waals contacts that are important for a catalytically competent docking of the heme domain onto the FDH domain. In addition, with several extremely slow mutant enzymes, we propose an isosbestic wavelength between oxidized and reduced heme for specifically following the kinetics of flavosemiquinone formation from two-electron reduced flavin.

摘要

每个黄素细胞色素b(2)(L-乳酸细胞色素c氧化还原酶)亚基都由一个N端细胞色素结构域和一个C端黄素脱氢酶(FDH)结构域组成。在酶的晶体结构中,每个酶四聚体仅可见两个血红素结构域,因为另外两个血红素结构域相对于FDH结构域具有移动性。随后有证据表明这种移动性在溶液中也存在。大量动力学研究表明,在催化循环过程中,电子在同一亚基内从还原型黄素逐个转移至血红素b(2)。在之前的工作中,我们提供了证据,即一种消除黄素至血红素电子转移的单克隆抗体利用部分结构域间界面来结合其抗原——天然血红素结构域。在这项工作中,我们在界面及其周围使用了多个血红素结构域侧链取代,以探究它们对黄素至血红素电子转移的影响。通过稳态和预稳态动力学,以及氧化还原电位测定和电子顺磁共振测量,我们确定了几种疏水相互作用和范德华接触,这些对于血红素结构域与FDH结构域的催化活性对接很重要。此外,对于几种极其缓慢的突变酶,我们提出了氧化型和还原型血红素之间的等吸收波长,用于专门跟踪由双电子还原黄素形成黄素半醌的动力学。

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Interdomain contacts in flavocytochrome b(2), a mutational analysis.黄素细胞色素b(2)中的结构域间接触:突变分析
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引用本文的文献

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Direct Electron Transfer of Enzymes Facilitated by Cytochromes.细胞色素促进酶的直接电子转移
ChemElectroChem. 2019 Feb 15;6(4):958-975. doi: 10.1002/celc.201801256. Epub 2018 Dec 13.
2
Another look at the interaction between mitochondrial cytochrome c and flavocytochrome b (2).再看一下线粒体细胞色素 c 和黄素细胞色素 b(2)之间的相互作用。
Eur Biophys J. 2011 Dec;40(12):1283-99. doi: 10.1007/s00249-011-0697-0. Epub 2011 Apr 19.