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α-螺旋肽折叠能量景观的盐依赖性

Salt dependence of an alpha-helical peptide folding energy landscapes.

作者信息

Xiong Kan, Asciutto Eliana K, Madura Jeffry D, Asher Sanford A

机构信息

Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, USA.

出版信息

Biochemistry. 2009 Nov 17;48(45):10818-26. doi: 10.1021/bi9014709.

Abstract

We used CD, UV resonance Raman spectroscopy, and molecular dynamics simulation to examine the impact of salts on the conformational equilibria and the Ramachandran Psi angle (un)folding Gibbs free energy landscape coordinate of a mainly polyalanine alpha-helical peptide, AP of sequence AAAAA(AAARA)(3)A. NaClO(4) stabilizes alpha-helical-like conformations more than does NaCl, which stabilizes more than Na(2)SO(4) at identical ionic strengths. This alpha-helix stabilization ordering is the reverse of the Hofmeister series of anions in their ability to disorder water hydrogen bonding. Much of the NaClO(4) alpha-helix stabilization results from ClO(4)(-) association with the AP terminal -NH(3)(+) groups and Arg side chains. ClO(4)(-) stabilizes 3(10)-helix conformations but destabilizes turn conformations. The decreased Cl(-) and SO(4)(2-) AP alpha-helix stabilization probably results from a decreased association with the Arg and terminal -NH(3)(+) groups. Cl(-) is expected to have a smaller binding affinity and thus stabilizes alpha-helical conformations intermediately between NaClO(4) and Na(2)SO(4). Electrostatic screening stabilizes pi-bulge conformations.

摘要

我们使用圆二色光谱(CD)、紫外共振拉曼光谱以及分子动力学模拟,来研究盐对一种主要为聚丙氨酸α-螺旋肽(序列为AAAAA(AAARA)(3)A的AP肽)的构象平衡以及拉马钱德兰ψ角(去)折叠吉布斯自由能景观坐标的影响。在相同离子强度下,高氯酸钠(NaClO₄)比氯化钠更能稳定α-螺旋样构象,而氯化钠比硫酸钠更能稳定。这种α-螺旋稳定顺序与霍夫迈斯特阴离子系列在扰乱水氢键能力方面的顺序相反。高氯酸钠对α-螺旋的稳定作用很大程度上源于高氯酸根离子(ClO₄⁻)与AP肽末端-NH₃⁺基团以及精氨酸侧链的结合。ClO₄⁻能稳定3(10)-螺旋构象,但会使转角构象不稳定。氯离子(Cl⁻)和硫酸根离子(SO₄²⁻)对AP肽α-螺旋稳定作用的降低,可能是由于它们与精氨酸和末端-NH₃⁺基团的结合减少。预计Cl⁻具有较小的结合亲和力,因此在稳定α-螺旋构象方面介于高氯酸钠和硫酸钠之间。静电屏蔽作用能稳定π-凸起构象。

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本文引用的文献

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Protein Folding: A Perspective from Theory and Experiment.蛋白质折叠:理论与实验视角
Angew Chem Int Ed Engl. 1998 Apr 20;37(7):868-893. doi: 10.1002/(SICI)1521-3773(19980420)37:7<868::AID-ANIE868>3.0.CO;2-H.
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The protein folding problem.蛋白质折叠问题。
Annu Rev Biophys. 2008;37:289-316. doi: 10.1146/annurev.biophys.37.092707.153558.
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Mechanisms of protein folding.蛋白质折叠机制。
Eur Biophys J. 2008 Jul;37(6):721-8. doi: 10.1007/s00249-007-0256-x. Epub 2008 Jan 9.

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