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蛋白质结构计划材料库:生物界结构基因组质粒的开放共享公共资源。

Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community.

机构信息

Arizona State University, Biodesign Institute, Virginia G Piper Center for Personalized Diagnostics, 1001 S McAllister Dr Tempe, AZ 85287-6401, USA.

出版信息

Nucleic Acids Res. 2010 Jan;38(Database issue):D743-9. doi: 10.1093/nar/gkp999. Epub 2009 Nov 11.

Abstract

The Protein Structure Initiative Material Repository (PSI-MR; http://psimr.asu.edu) provides centralized storage and distribution for the protein expression plasmids created by PSI researchers. These plasmids are a resource that allows the research community to dissect the biological function of proteins whose structures have been identified by the PSI. The plasmid annotation, which includes the full length sequence, vector information and associated publications, is stored in a freely available, searchable database called DNASU (http://dnasu.asu.edu). Each PSI plasmid is also linked to a variety of additional resources, which facilitates cross-referencing of a particular plasmid to protein annotations and experimental data. Plasmid samples can be requested directly through the website. We have also developed a novel strategy to avoid the most common concern encountered when distributing plasmids namely, the complexity of material transfer agreement (MTA) processing and the resulting delays this causes. The Expedited Process MTA, in which we created a network of institutions that agree to the terms of transfer in advance of a material request, eliminates these delays. Our hope is that by creating a repository of expression-ready plasmids and expediting the process for receiving these plasmids, we will help accelerate the accessibility and pace of scientific discovery.

摘要

蛋白质结构计划材料库(PSI-MR;http://psimr.asu.edu)为 PSI 研究人员创建的蛋白质表达质粒提供了集中存储和分发服务。这些质粒是一种资源,允许研究社区剖析那些结构已被 PSI 确定的蛋白质的生物功能。质粒注释包括全长序列、载体信息和相关出版物,存储在一个名为 DNASU(http://dnasu.asu.edu)的免费、可搜索数据库中。每个 PSI 质粒还与各种其他资源相关联,这有助于将特定质粒与蛋白质注释和实验数据进行交叉引用。质粒样本可以直接通过网站请求。我们还开发了一种新策略来避免在分发质粒时最常见的问题,即材料转移协议(MTA)处理的复杂性以及由此导致的延迟。快速处理 MTA 中,我们创建了一个机构网络,这些机构在提出材料请求之前就同意了转让条款,从而消除了这些延迟。我们希望通过创建一个表达就绪质粒库并加快接收这些质粒的流程,帮助加快科学发现的可及性和速度。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2261/2808882/77705ac9ac5c/gkp999f1.jpg

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