A cornucopia of Helitrons shapes the maize genome.
作者信息
Feschotte Cédric, Pritham Ellen J
机构信息
Department of Biology, University of Texas, Arlington, TX 76019, USA.
出版信息
Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19747-8. doi: 10.1073/pnas.0910273106. Epub 2009 Nov 19.
Abstract
摘要
相似文献
1
A cornucopia of Helitrons shapes the maize genome.大量的Helitron转座子塑造了玉米基因组。
Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19747-8. doi: 10.1073/pnas.0910273106. Epub 2009 Nov 19.
2
A comparative computational analysis of nonautonomous helitron elements between maize and rice.玉米和水稻之间非自主Helitron元件的比较计算分析
BMC Genomics. 2008 Oct 8;9:467. doi: 10.1186/1471-2164-9-467.
3
Computational prediction and molecular confirmation of Helitron transposons in the maize genome.玉米基因组中Helitron转座子的计算预测与分子验证
BMC Genomics. 2008 Jan 28;9:51. doi: 10.1186/1471-2164-9-51.
4
Plant genomes: massive changes of the maize genome are caused by Helitrons.植物基因组：玉米基因组的巨大变化是由转座子引起的。
Heredity (Edinb). 2005 Dec;95(6):421-2. doi: 10.1038/sj.hdy.6800764.
5
Differential pre-mRNA Splicing Alters the Transcript Diversity of Helitrons Between the Maize Inbred Lines.差异前体mRNA剪接改变了玉米自交系间逆转座子的转录本多样性。
G3 (Bethesda). 2015 Jun 12;5(8):1703-11. doi: 10.1534/g3.115.018630.
6
Excision of Helitron transposons in maize.玉米中Helitron转座子的切除
Genetics. 2009 May;182(1):399-402. doi: 10.1534/genetics.109.101527. Epub 2009 Mar 2.
7
The polychromatic Helitron landscape of the maize genome.玉米基因组的多色转座子景观。
Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19916-21. doi: 10.1073/pnas.0904742106. Epub 2009 Nov 19.
8
Distribution, diversity, evolution, and survival of Helitrons in the maize genome.Helitrons 在玉米基因组中的分布、多样性、进化和生存。
Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19922-7. doi: 10.1073/pnas.0908008106. Epub 2009 Nov 19.
9
Computational methods for identification of DNA transposons.用于鉴定DNA转座子的计算方法。
Methods Mol Biol. 2013;1057:289-304. doi: 10.1007/978-1-62703-568-2_21.
10
The maize gene space is compositionally compartimentalized.玉米基因空间在组成上是分区的。
FEBS Lett. 2005 Jul 18;579(18):3867-71. doi: 10.1016/j.febslet.2005.05.063.
引用本文的文献
1
Abundance of Transgene Transcript Variants Associated with Somatically Active Transgenic from Multiple T-DNA Integration Sites in Maize.与玉米中多个 T-DNA 整合位点的体细胞活跃转基因相关的转基因转录变体丰度。
Int J Mol Sci. 2023 Mar 31;24(7):6574. doi: 10.3390/ijms24076574.
2
Non-canonical Helitrons in .非典型Helitrons在……中
Mob DNA. 2016 Dec 9;7:27. doi: 10.1186/s13100-016-0083-7. eCollection 2016.
3
Gene acquisition convergence between entomopoxviruses and baculoviruses.昆虫痘病毒和杆状病毒之间的基因获得趋同现象。
Viruses. 2015 Apr 13;7(4):1960-74. doi: 10.3390/v7041960.
4
Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi.Helitrons中高度表达的捕获基因和跨王国结构域在平菇和其他真菌中创造了新的多样性。
BMC Genomics. 2014 Dec 5;15(1):1071. doi: 10.1186/1471-2164-15-1071.
5
Rolling-circle transposons catalyze genomic innovation in a mammalian lineage.滚环转座子催化哺乳动物谱系中的基因组创新。
Genome Biol Evol. 2014 Sep 14;6(10):2595-610. doi: 10.1093/gbe/evu204.
6
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes.HelitronScanner 揭示了许多植物基因组中大量被忽视的 Helitron 转座子库。
Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10263-8. doi: 10.1073/pnas.1410068111. Epub 2014 Jun 30.
7
The Tc1/mariner transposable element family shapes genetic variation and gene expression in the protist Trichomonas vaginalis.Tc1/mariner 转座元件家族塑造了原生动物阴道毛滴虫中的遗传变异和基因表达。
Mob DNA. 2014 Apr 24;5:12. doi: 10.1186/1759-8753-5-12. eCollection 2014.
8
Identification and evolution of the silkworm helitrons and their contribution to transcripts.家蚕 Helitrons 的鉴定和进化及其对转录本的贡献。
DNA Res. 2013 Oct;20(5):471-84. doi: 10.1093/dnares/dst024. Epub 2013 Jun 14.
9
Structural characterization of helitrons and their stepwise capturing of gene fragments in the maize genome.Helitrons 的结构特征及其在玉米基因组中逐步捕获基因片段。
BMC Genomics. 2011 Dec 17;12:609. doi: 10.1186/1471-2164-12-609.
10
Gene capture by Helitron transposons reshuffles the transcriptome of maize.Helitron 转座子通过基因捕获重组了玉米的转录组。
Genetics. 2012 Mar;190(3):965-75. doi: 10.1534/genetics.111.136176. Epub 2011 Dec 14.
本文引用的文献
1
Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes.使用 REPCLASS 探索重复 DNA 景观，这是一种自动化分类真核生物基因组中转座元件的工具。
Genome Biol Evol. 2009 Jul 23;1:205-20. doi: 10.1093/gbe/evp023.
2
The B73 maize genome: complexity, diversity, and dynamics.B73玉米基因组：复杂性、多样性与动态性。
Science. 2009 Nov 20;326(5956):1112-5. doi: 10.1126/science.1178534.
3
The polychromatic Helitron landscape of the maize genome.玉米基因组的多色转座子景观。
Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19916-21. doi: 10.1073/pnas.0904742106. Epub 2009 Nov 19.
4
Distribution, diversity, evolution, and survival of Helitrons in the maize genome.Helitrons 在玉米基因组中的分布、多样性、进化和生存。
Proc Natl Acad Sci U S A. 2009 Nov 24;106(47):19922-7. doi: 10.1073/pnas.0908008106. Epub 2009 Nov 19.
5
Structure-based discovery and description of plant and animal Helitrons.基于结构的动植物Helitrons转座子的发现与描述
Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12832-7. doi: 10.1073/pnas.0905563106. Epub 2009 Jul 21.
6
Excision of Helitron transposons in maize.玉米中Helitron转座子的切除
Genetics. 2009 May;182(1):399-402. doi: 10.1534/genetics.109.101527. Epub 2009 Mar 2.
7
A comparative computational analysis of nonautonomous helitron elements between maize and rice.玉米和水稻之间非自主Helitron元件的比较计算分析
BMC Genomics. 2008 Oct 8;9:467. doi: 10.1186/1471-2164-9-467.
8
Computational prediction and molecular confirmation of Helitron transposons in the maize genome.玉米基因组中Helitron转座子的计算预测与分子验证
BMC Genomics. 2008 Jan 28;9:51. doi: 10.1186/1471-2164-9-51.
9
The tightly regulated promoter of the xanA gene of Aspergillus nidulans is included in a helitron.构巢曲霉xanA基因严格调控的启动子包含在一个转座子中。
Mol Microbiol. 2007 Mar;63(6):1577-87. doi: 10.1111/j.1365-2958.2007.05609.x.
10
Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus.蝙蝠鼠耳蝠谱系中滚环转座子的大量扩增。
Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1895-900. doi: 10.1073/pnas.0609601104. Epub 2007 Jan 29.
Zotero 插件