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鞘氨醇杆菌属新种,分离自森林土壤。

Sphingobacterium shayense sp. nov., isolated from forest soil.

机构信息

College of Life Science and Technology of Xinjiang University, Urumqi, Xinjiang 830046, PR China.

College of Life Sciences, Wuhan University, Wuhan 430072, PR China.

出版信息

Int J Syst Evol Microbiol. 2010 Oct;60(Pt 10):2377-2381. doi: 10.1099/ijs.0.018481-0. Epub 2009 Nov 20.

Abstract

A Gram-staining-negative, yellow-coloured, strictly aerobic, non-spore-forming, rod-shaped bacterium, designated HS39(T), isolated from a soil sample collected from a natural Populus euphratica forest in Xinjiang, China, was characterized using a polyphasic approach. The isolate grew optimally at 30-37 °C, at pH 6.5-8.0 and with 0-3 % NaCl. Analysis of the 16S rRNA gene sequence of strain HS39(T) revealed that it is a member of the genus Sphingobacterium. Sphingobacterium mizutaii ATCC 33299(T) was the nearest relative (94.0 % 16S rRNA gene sequence similarity). The G+C content of the genomic DNA was 40.2 mol%. The major fatty acids were iso-C₁₅:₀, iso-C₁₇:₀ 3-OH and summed feature 3 (comprising C₁₆:₁ω6c and/or C₁₆:₁ω7c). The predominant isoprenoid quinone was MK-7. On the basis of phenotypic properties and phylogenetic inference, strain HS39(T) represents a novel species of the genus Sphingobacterium, for which the name Sphingobacterium shayense sp. nov. is proposed. The type strain is HS39(T) (=CCTCC AB 209006(T) =NRRL B-59203(T)).

摘要

一株革兰氏阴性、黄色、严格需氧、不产芽孢的杆状细菌,命名为 HS39(T),从中国新疆自然胡杨林的土壤样本中分离得到,采用多相分类法进行了表征。该分离物在 30-37 °C、pH 6.5-8.0 和 0-3%NaCl 下生长最佳。对菌株 HS39(T)的 16S rRNA 基因序列分析表明,它是鞘氨醇单胞菌属的一个成员。与 Sphingobacterium mizutaii ATCC 33299(T)(94.0%16S rRNA 基因序列相似性)亲缘关系最近。基因组 DNA 的 G+C 含量为 40.2mol%。主要脂肪酸为 iso-C₁₅:₀、iso-C₁₇:₀ 3-OH 和特征性脂肪酸 3(包含 C₁₆:₁ω6c 和/或 C₁₆:₁ω7c)。主要的异戊二烯醌是 MK-7。基于表型特征和系统发育推断,菌株 HS39(T)代表鞘氨醇单胞菌属的一个新种,建议命名为沙氏鞘氨醇单胞菌(Sphingobacterium shayense)sp. nov.。模式菌株为 HS39(T)(=CCTCC AB 209006(T)=NRRL B-59203(T))。

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