Research Service, Louis Stokes Cleveland Department of Veterans Affairs Medical Center, Cleveland, Ohio 44106, USA.
Biochemistry. 2010 Feb 9;49(5):1014-23. doi: 10.1021/bi9015549.
The biochemical properties of CMY-32, a class C enzyme possessing a single-amino acid substitution in the Omega loop (Gly214Glu), were compared to those of the parent enzyme, CMY-2, a widespread class C beta-lactamase. In parallel with our microbiological characterization, the Gly214Glu substitution in CMY-32 reduced catalytic efficiency (k(cat)/K(m)) by 50-70% against "good" substrates (i.e., cephalothin) while increasing k(cat)/K(m) against "poor" substrates (i.e., cefotaxime). Additionally, CMY-32 was more susceptible to inactivation by sulfone beta-lactamase inhibitors (i.e., sulbactam and tazobactam) than CMY-2. Timed electrospray ionization mass spectrometry (ESI-MS) analysis of the reaction of CMY-2 and CMY-32 with different substrates and inhibitors suggested that both beta-lactamases formed similar intermediates during catalysis and inactivation. We next showed that the carbapenems (imipenem, meropenem, and doripenem) form long-lived acyl-enzyme intermediates and present evidence that there is beta-lactamase-catalyzed elimination of the C(6) hydroxyethyl substituent. Furthermore, we discovered that the monobactam aztreonam and BAL29880, a new beta-lactamase inhibitor of the monobactam class, inactivate CMY-2 and CMY-32 by forming an acyl-enzyme intermediate that undergoes elimination of SO(3)(2-). Molecular modeling and dynamics simulations suggest that the Omega loop is more constrained in CMY-32 than CMY-2. Our model also proposes that Gln120 adopts a novel conformation in the active site while new interactions form between Glu214 and Tyr221, thus explaining the increased level of cefotaxime hydrolysis. When it is docked in the active site, we observe that BAL29880 exploits contacts with highly conserved residues Lys67 and Asn152 in CMY-2 and CMY-32. These findings highlight (i) the impact of single-amino acid substitutions on protein evolution in clinically important AmpC enzymes and (ii) the novel insights into the mechanisms by which carbapenems and monobactams interact with CMY-2 and CMY-32 beta-lactamases.
CMY-32 是一种 C 类酶,其在 Omega 环中有一个单一氨基酸取代(甘氨酸 214 至谷氨酸),我们比较了它与亲本酶 CMY-2(一种广泛存在的 C 类β-内酰胺酶)的生化特性。在进行微生物学特性鉴定的同时,CMY-32 中的甘氨酸 214 至谷氨酸取代使酶对“良好”底物(即头孢噻吩)的催化效率(kcat/Km)降低了 50-70%,而对“较差”底物(即头孢噻肟)的 kcat/Km 则增加了。此外,CMY-32 比 CMY-2 更容易被磺基-β-内酰胺酶抑制剂(即舒巴坦和他唑巴坦)失活。对 CMY-2 和 CMY-32 与不同底物和抑制剂反应的实时电喷雾电离质谱(ESI-MS)分析表明,两种β-内酰胺酶在催化和失活过程中形成相似的中间体。我们接下来表明,碳青霉烯类(亚胺培南、美罗培南和多尼培南)形成长寿命的酰基-酶中间体,并提供了证据表明存在β-内酰胺酶催化的 C(6)羟乙基取代基消除。此外,我们发现单环β-内酰胺类新的单环β-内酰胺酶抑制剂氨曲南和 BAL29880 通过形成发生 SO3(2-)消除的酰基-酶中间体来使 CMY-2 和 CMY-32 失活。分子建模和动力学模拟表明,在 CMY-32 中,Omega 环的约束程度比 CMY-2 更高。我们的模型还提出,在活性部位中,谷氨酰胺 120 采用新的构象,而谷氨酸 214 和酪氨酸 221 之间形成新的相互作用,从而解释了头孢噻肟水解水平的提高。当 BAL29880 被对接在活性部位时,我们观察到它利用与 CMY-2 和 CMY-32 中高度保守的残基赖氨酸 67 和天冬酰胺 152 的接触。这些发现突出了(i)单个氨基酸取代对临床重要 AmpC 酶中蛋白质进化的影响,以及(ii)碳青霉烯类和单环β-内酰胺类与 CMY-2 和 CMY-32β-内酰胺酶相互作用的机制的新见解。