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秘鲁和全球报道的结核分枝杆菌吡嗪酰胺酶的氨基酸取代表明与吡嗪酰胺耐药相关的突变存在保守模式。

Peruvian and globally reported amino acid substitutions on the Mycobacterium tuberculosis pyrazinamidase suggest a conserved pattern of mutations associated to pyrazinamide resistance.

机构信息

Unidad de Bioinformática, Laboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Av. Honorio Delgado 430, SMP, Lima, Peru.

出版信息

Infect Genet Evol. 2010 Mar;10(2):346-9. doi: 10.1016/j.meegid.2009.11.016. Epub 2009 Dec 4.

Abstract

Resistance to pyrazinamide in Mycobacterium tuberculosis is usually associated with a reduction of pyrazinamidase activity caused by mutations in pncA, the pyrazinamidase coding gene. Pyrazinamidase is a hydrolase that converts pyrazinamide, the antituberculous drug against the latent stage, to the active compound, pyrazinoic acid. To better understand the relationship between pncA mutations and pyrazinamide resistance, it is necessary to analyze the distribution of pncA mutations from pyrazinamide resistant strains. We determined the distribution of Peruvian and globally reported pncA missense mutations from M. tuberculosis clinical isolates resistant to pyrazinamide. The distributions of the single amino acid substitutions were compared at the secondary structure domains level. The distribution of the Peruvian mutations followed a similar pattern as the mutations reported globally. A consensus clustering of mutations was observed in hot-spot regions located in the metal coordination site and to a lesser extent in the active site of the enzyme. The data was not able to reject the null hypothesis that both distributions are similar, suggesting that pncA mutations associated to pyrazinamide resistance in M. tuberculosis, follow a conserved pattern responsible to impair the pyrazinamidase activity.

摘要

结核分枝杆菌对吡嗪酰胺的耐药性通常与 pncA 基因突变导致的吡嗪酰胺酶活性降低有关,pncA 是编码吡嗪酰胺酶的基因。吡嗪酰胺酶是一种水解酶,可将吡嗪酰胺(针对潜伏期的抗结核药物)转化为活性化合物吡嗪酸。为了更好地了解 pncA 基因突变与吡嗪酰胺耐药性之间的关系,有必要分析来自吡嗪酰胺耐药菌株的 pncA 基因突变分布。我们确定了来自耐吡嗪酰胺的结核分枝杆菌临床分离株的秘鲁和全球报告的 pncA 错义突变的分布。在二级结构域水平上比较了单个氨基酸取代的分布。秘鲁突变的分布与全球报道的突变相似。在位于金属配位位点的热点区域和在一定程度上在酶的活性位点观察到突变的一致聚类。数据不能拒绝两个分布相似的零假设,这表明与结核分枝杆菌中吡嗪酰胺耐药相关的 pncA 突变遵循一种保守模式,负责损害吡嗪酰胺酶的活性。

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