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通过鸟嘌呤脱氨酶进行细菌氨茴霉素代谢。

Bacterial ammeline metabolism via guanine deaminase.

机构信息

Department of Biochemistry, Molecular Biology & Biophysics, University of Minnesota, St. Paul, MN 55108, USA.

出版信息

J Bacteriol. 2010 Feb;192(4):1106-12. doi: 10.1128/JB.01243-09. Epub 2009 Dec 18.

Abstract

Melamine toxicity in mammals has been attributed to the blockage of kidney tubules by insoluble complexes of melamine with cyanuric acid or uric acid. Bacteria metabolize melamine via three consecutive deamination reactions to generate cyanuric acid. The second deamination reaction, in which ammeline is the substrate, is common to many bacteria, but the genes and enzymes responsible have not been previously identified. Here, we combined bioinformatics and experimental data to identify guanine deaminase as the enzyme responsible for this biotransformation. The ammeline degradation phenotype was demonstrated in wild-type Escherichia coli and Pseudomonas strains, including E. coli K12 and Pseudomonas putida KT2440. Bioinformatics analysis of these and other genomes led to the hypothesis that the ammeline deaminating enzyme was guanine deaminase. An E. coli guanine deaminase deletion mutant was deficient in ammeline deaminase activity, supporting the role of guanine deaminase in this reaction. Two guanine deaminases from disparate sources (Bradyrhizobium japonicum USDA 110 and Homo sapiens) that had available X-ray structures were purified to homogeneity and shown to catalyze ammeline deamination at rates sufficient to support bacterial growth on ammeline as a sole nitrogen source. In silico models of guanine deaminase active sites showed that ammeline could bind to guanine deaminase in a similar orientation to guanine, with a favorable docking score. Other members of the amidohydrolase superfamily that are not guanine deaminases were assayed in vitro, and none had substantial ammeline deaminase activity. The present study indicated that widespread guanine deaminases have a promiscuous activity allowing them to catalyze a key reaction in the bacterial transformation of melamine to cyanuric acid and potentially contribute to the toxicity of melamine.

摘要

三聚氰胺毒性被认为是三聚氰胺与氰尿酸或尿酸形成不溶性复合物,从而导致哺乳动物的肾小管阻塞。细菌通过三个连续的脱氨反应将三聚氰胺代谢为氰尿酸。第二个脱氨反应以氨甲脒为底物,这是许多细菌共有的,但以前尚未确定负责的基因和酶。在这里,我们结合生物信息学和实验数据,鉴定出鸟嘌呤脱氨酶是负责这种生物转化的酶。野生型大肠杆菌和假单胞菌菌株(包括大肠杆菌 K12 和恶臭假单胞菌 KT2440)表现出氨甲脒降解表型。对这些和其他基因组的生物信息学分析导致了这样一种假设,即氨甲脒脱氨酶是鸟嘌呤脱氨酶。大肠杆菌鸟嘌呤脱氨酶缺失突变体缺乏氨甲脒脱氨酶活性,支持鸟嘌呤脱氨酶在该反应中的作用。来自不同来源(日本根瘤菌 USDA 110 和智人)的两种鸟嘌呤脱氨酶具有可用的 X 射线结构,它们被纯化至均相,并显示出足以支持细菌以氨甲脒为唯一氮源生长的氨甲脒脱氨活性。鸟嘌呤脱氨酶活性部位的计算模型表明,氨甲脒可以以类似于鸟嘌呤的方式结合到鸟嘌呤脱氨酶中,具有有利的对接评分。在体外测定了不属于鸟嘌呤脱氨酶的酰胺水解酶超家族的其他成员,它们都没有明显的氨甲脒脱氨酶活性。本研究表明,广泛存在的鸟嘌呤脱氨酶具有一种混杂活性,使它们能够催化细菌将三聚氰胺转化为氰尿酸的关键反应,并且可能导致三聚氰胺的毒性。

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