School of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, UK.
J Am Chem Soc. 2010 Jan 27;132(3):1137-43. doi: 10.1021/ja909353c.
Hydride transfer catalyzed by dihydrofolate reductase (DHFR) has been described previously within an environmentally coupled model of hydrogen tunneling, where protein motions control binding of substrate and cofactor to generate a tunneling ready conformation and modulate the width of the activation barrier and hence the reaction rate. Changes to the composition of the reaction medium are known to perturb protein motions. We have measured kinetic parameters of the reaction catalyzed by DHFR from Escherichia coli in the presence of various cosolvents and cosolutes and show that the dielectric constant, but not the viscosity, of the reaction medium affects the rate of reaction. Neither the primary kinetic isotope effect on the reaction nor its temperature dependence were affected by changes to the bulk solvent properties. These results are in agreement with our previous report on the effect of solvent composition on catalysis by DHFR from the hyperthermophile Thermotoga maritima. However, the effect of solvent on the temperature dependence of the kinetic isotope effect on hydride transfer catalyzed by E. coli DHFR is difficult to explain within a model, in which long-range motions couple to the chemical step of the reaction, but may indicate the existence of a short-range promoting vibration or the presence of multiple nearly isoenergetic conformational substates of enzymes with similar but distinct catalytic properties.
先前在氢隧穿的环境耦合模型中描述了二氢叶酸还原酶(DHFR)催化的氢化物转移,其中蛋白质运动控制底物和辅因子的结合,以产生隧穿准备构象,并调节活化势垒的宽度,从而调节反应速率。已知反应介质的组成变化会干扰蛋白质运动。我们已经测量了来自大肠杆菌的 DHFR 催化反应的动力学参数,在存在各种共溶剂和共溶质的情况下,并表明反应介质的介电常数而不是粘度会影响反应速率。反应的主要动力学同位素效应及其对温度的依赖性都不会因溶剂性质的变化而受到影响。这些结果与我们之前关于溶剂组成对来自嗜热古菌 Thermotoga maritima 的 DHFR 催化作用的影响的报告一致。然而,溶剂对大肠杆菌 DHFR 催化的氢化物转移的动力学同位素效应的温度依赖性的影响很难用模型来解释,在该模型中,远程运动与反应的化学步骤耦合,但可能表明存在短程促进振动或存在具有相似但不同催化特性的酶的多个近等能量构象亚基。