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本文引用的文献

1
SoftWAXS: a computational tool for modeling wide-angle X-ray solution scattering from biomolecules.SoftWAXS:一种用于对生物分子广角X射线溶液散射进行建模的计算工具。
J Appl Crystallogr. 2009 Oct 1;42(Pt 5):932-943. doi: 10.1107/S0021889809032919. Epub 2009 Sep 8.
2
Robust, high-throughput solution structural analyses by small angle X-ray scattering (SAXS).通过小角X射线散射(SAXS)进行稳健的高通量溶液结构分析。
Nat Methods. 2009 Aug;6(8):606-12. doi: 10.1038/nmeth.1353. Epub 2009 Jul 20.
3
A rapid coarse residue-based computational method for x-ray solution scattering characterization of protein folds and multiple conformational states of large protein complexes.一种基于快速粗粒度残基的计算方法,用于蛋白质折叠和大型蛋白质复合物多种构象状态的X射线溶液散射表征。
Biophys J. 2009 Jun 3;96(11):4449-63. doi: 10.1016/j.bpj.2009.03.036.
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Simulated x-ray scattering of protein solutions using explicit-solvent models.使用显式溶剂模型模拟蛋白质溶液的X射线散射。
J Chem Phys. 2009 Apr 7;130(13):134114. doi: 10.1063/1.3099611.
5
Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering.利用时间分辨广角X射线散射追踪溶液中蛋白质的结构动力学。
Nat Methods. 2008 Oct;5(10):881-6. doi: 10.1038/nmeth.1255. Epub 2008 Sep 21.
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Characterization of protein fold by wide-angle X-ray solution scattering.通过广角X射线溶液散射对蛋白质折叠进行表征。
J Mol Biol. 2008 Nov 14;383(3):731-44. doi: 10.1016/j.jmb.2008.08.038. Epub 2008 Aug 23.
7
Integration of small-angle X-ray scattering data into structural modeling of proteins and their assemblies.将小角X射线散射数据整合到蛋白质及其组装体的结构建模中。
J Mol Biol. 2008 Oct 17;382(4):1089-106. doi: 10.1016/j.jmb.2008.07.074. Epub 2008 Jul 31.
8
X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution.X射线溶液散射(SAXS)与晶体学和计算相结合:确定溶液中精确的大分子结构、构象和组装体。
Q Rev Biophys. 2007 Aug;40(3):191-285. doi: 10.1017/S0033583507004635.
9
The Pfam protein families database.Pfam蛋白质家族数据库。
Nucleic Acids Res. 2008 Jan;36(Database issue):D281-8. doi: 10.1093/nar/gkm960. Epub 2007 Nov 26.
10
Molecular crowding inhibits intramolecular breathing motions in proteins.分子拥挤抑制蛋白质的分子内呼吸运动。
J Mol Biol. 2008 Jan 11;375(2):529-46. doi: 10.1016/j.jmb.2007.07.075. Epub 2007 Aug 17.

利用广角X射线溶液散射(WAXS)对蛋白质进行表征。

Characterization of proteins with wide-angle X-ray solution scattering (WAXS).

作者信息

Makowski Lee

机构信息

Biosciences Division, Argonne National Laboratory, Argonne, IL, USA.

出版信息

J Struct Funct Genomics. 2010 Mar;11(1):9-19. doi: 10.1007/s10969-009-9075-x. Epub 2010 Jan 5.

DOI:10.1007/s10969-009-9075-x
PMID:20049539
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3057577/
Abstract

X-ray solution scattering in both the small-angle (SAXS) and wide-angle (WAXS) regimes is making an increasing impact on our understanding of biomolecular complexes. The accurate calculation of WAXS patterns from atomic coordinates has positioned the approach for rapid growth and integration with existing Structural Genomics efforts. WAXS data are sensitive to small structural changes in proteins; useful for calculation of the pair-distribution function at relatively high resolution; provides a means to characterize the breadth of the structural ensemble in solution; and can be used to identify proteins with similar folds. WAXS data are often used to test structural models, identify structural similarities and characterize structural changes. WAXS is highly complementary to crystallography and NMR. It holds great potential for the testing of structural models of proteins; identification of proteins that may exhibit novel folds; characterization of unfolded or natively disordered proteins; and detection of structural changes associated with protein function.

摘要

小角(SAXS)和广角(WAXS)X射线溶液散射对我们理解生物分子复合物的影响日益增大。根据原子坐标精确计算WAXS图谱,为该方法的快速发展以及与现有结构基因组学研究的整合奠定了基础。WAXS数据对蛋白质的微小结构变化敏感;有助于在相对高分辨率下计算对分布函数;提供了一种表征溶液中结构集合广度的方法;并且可用于识别具有相似折叠的蛋白质。WAXS数据常被用于测试结构模型、识别结构相似性以及表征结构变化。WAXS与晶体学和核磁共振高度互补。它在测试蛋白质结构模型、识别可能呈现新折叠的蛋白质、表征未折叠或天然无序的蛋白质以及检测与蛋白质功能相关的结构变化方面具有巨大潜力。