文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

多梳靶基因的替代性表观遗传染色质状态。

Alternative epigenetic chromatin states of polycomb target genes.

机构信息

Department of Molecular Biology and Biochemistry, Rutgers University, Nelson Laboratories, Piscataway, New Jersey, United States of America.

出版信息

PLoS Genet. 2010 Jan;6(1):e1000805. doi: 10.1371/journal.pgen.1000805. Epub 2010 Jan 8.


DOI:10.1371/journal.pgen.1000805
PMID:20062800
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2799325/
Abstract

Polycomb (PcG) regulation has been thought to produce stable long-term gene silencing. Genomic analyses in Drosophila and mammals, however, have shown that it targets many genes, which can switch state during development. Genetic evidence indicates that critical for the active state of PcG target genes are the histone methyltransferases Trithorax (TRX) and ASH1. Here we analyze the repertoire of alternative states in which PcG target genes are found in different Drosophila cell lines and the role of PcG proteins TRX and ASH1 in controlling these states. Using extensive genome-wide chromatin immunoprecipitation analysis, RNAi knockdowns, and quantitative RT-PCR, we show that, in addition to the known repressed state, PcG targets can reside in a transcriptionally active state characterized by formation of an extended domain enriched in ASH1, the N-terminal, but not C-terminal moiety of TRX and H3K27ac. ASH1/TRX N-ter domains and transcription are not incompatible with repressive marks, sometimes resulting in a "balanced" state modulated by both repressors and activators. Often however, loss of PcG repression results instead in a "void" state, lacking transcription, H3K27ac, or binding of TRX or ASH1. We conclude that PcG repression is dynamic, not static, and that the propensity of a target gene to switch states depends on relative levels of PcG, TRX, and activators. N-ter TRX plays a remarkable role that antagonizes PcG repression and preempts H3K27 methylation by acetylation. This role is distinct from that usually attributed to TRX/MLL proteins at the promoter. These results have important implications for Polycomb gene regulation, the "bivalent" chromatin state of embryonic stem cells, and gene expression in development.

摘要

多梳(PcG)调控被认为产生稳定的长期基因沉默。然而,在果蝇和哺乳动物中的基因组分析表明,它靶向许多基因,这些基因在发育过程中可以改变状态。遗传证据表明,对于 PcG 靶基因的活性状态至关重要的是组蛋白甲基转移酶 Trithorax (TRX) 和 ASH1。在这里,我们分析了不同果蝇细胞系中 PcG 靶基因所发现的替代状态的范围,以及 PcG 蛋白 TRX 和 ASH1 在控制这些状态中的作用。通过广泛的全基因组染色质免疫沉淀分析、RNAi 敲低和定量 RT-PCR,我们表明,除了已知的抑制状态外,PcG 靶基因还可以存在于转录活跃的状态,其特征是形成富含 ASH1 的扩展结构域,TRX 的 N 端,但不是 C 端部分和 H3K27ac。ASH1/TRX N 端结构域和转录与抑制标记并不矛盾,有时会导致“平衡”状态,同时受抑制剂和激活剂的调节。然而,通常情况下,PcG 抑制的丧失反而会导致“空”状态,缺乏转录、H3K27ac 或 TRX 或 ASH1 的结合。我们得出结论,PcG 抑制是动态的,而不是静态的,靶基因切换状态的倾向取决于 PcG、TRX 和激活剂的相对水平。N 端 TRX 发挥了显著的作用,拮抗 PcG 抑制,并通过乙酰化预先阻止 H3K27 甲基化。这个作用与通常归因于 TRX/MLL 蛋白在启动子上的作用不同。这些结果对 Polycomb 基因调控、胚胎干细胞的“双价”染色质状态以及发育过程中的基因表达具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/6b77306947dd/pgen.1000805.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/fd150fde8562/pgen.1000805.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/788ee6dc27c6/pgen.1000805.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/681cfe9ffbaa/pgen.1000805.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/405420d29c64/pgen.1000805.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/856dc82ea49a/pgen.1000805.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/c15e093c8a92/pgen.1000805.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/04ed4d8047fe/pgen.1000805.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/6b77306947dd/pgen.1000805.g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/fd150fde8562/pgen.1000805.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/788ee6dc27c6/pgen.1000805.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/681cfe9ffbaa/pgen.1000805.g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/405420d29c64/pgen.1000805.g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/856dc82ea49a/pgen.1000805.g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/c15e093c8a92/pgen.1000805.g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/04ed4d8047fe/pgen.1000805.g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5be8/2799325/6b77306947dd/pgen.1000805.g008.jpg

相似文献

[1]
Alternative epigenetic chromatin states of polycomb target genes.

PLoS Genet. 2010-1-8

[2]
Histone trimethylation and the maintenance of transcriptional ON and OFF states by trxG and PcG proteins.

Genes Dev. 2006-8-1

[3]
Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II.

PLoS Genet. 2008-10

[4]
CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing.

Development. 2009-9

[5]
The histone methyltransferases Trithorax and Ash1 prevent transcriptional silencing by Polycomb group proteins.

EMBO Rep. 2004-4

[6]
The trithorax group proteins Kismet and ASH1 promote H3K36 dimethylation to counteract Polycomb group repression in Drosophila.

Development. 2013-9-4

[7]
Trithorax monomethylates histone H3K4 and interacts directly with CBP to promote H3K27 acetylation and antagonize Polycomb silencing.

Development. 2014-3

[8]
Coordinated regulation of Myc trans-activation targets by Polycomb and the Trithorax group protein Ash1.

BMC Mol Biol. 2007-5-22

[9]
The BET protein FSH functionally interacts with ASH1 to orchestrate global gene activity in Drosophila.

Genome Biol. 2013-2-25

[10]
Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos.

PLoS Biol. 2009-1-13

引用本文的文献

[1]
Genomic context-dependent histone H3K36 methylation by three Drosophila methyltransferases and implications for dedicated chromatin readers.

Nucleic Acids Res. 2025-3-20

[2]
Distinct roles of COMPASS subunits to Drosophila heart development.

Biol Open. 2024-7-15

[3]
Genomic context-dependent histone H3K36 methylation by three Drosophila methyltransferases and implications for dedicated chromatin readers.

Nucleic Acids Res. 2024-7-22

[4]
Polycomb protein binding and looping in the ON transcriptional state.

Sci Adv. 2024-4-26

[5]
Forecasting histone methylation by Polycomb complexes with minute-scale precision.

Sci Adv. 2023-12-22

[6]
Polycomb protein binding and looping mediated by Polycomb Response Elements in the ON transcriptional state.

bioRxiv. 2023-11-4

[7]
DNA elements tether canonical Polycomb Repressive Complex 1 to human genes.

Nucleic Acids Res. 2023-11-27

[8]
Chromatin in 3D distinguishes dMes-4/NSD and Hypb/dSet2 in protecting genes from H3K27me3 silencing.

Life Sci Alliance. 2023-11

[9]
Topological screen identifies hundreds of Cp190- and CTCF-dependent chromatin insulator elements.

Sci Adv. 2023-2-3

[10]
Polycomb Requires for Maintaining Gene Silencing in .

Front Cell Dev Biol. 2021-10-1

本文引用的文献

[1]
CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing.

Development. 2009-9

[2]
Ezh2 orchestrates gene expression for the stepwise differentiation of tissue-specific stem cells.

Cell. 2009-3-20

[3]
Functional anatomy of polycomb and trithorax chromatin landscapes in Drosophila embryos.

PLoS Biol. 2009-1-13

[4]
Dynamic regulation by polycomb group protein complexes controls pattern formation and the cell cycle in Drosophila.

Dev Cell. 2008-12

[5]
Drosophila Kismet regulates histone H3 lysine 27 methylation and early elongation by RNA polymerase II.

PLoS Genet. 2008-10

[6]
Molecular regulation of H3K4 trimethylation by Wdr82, a component of human Set1/COMPASS.

Mol Cell Biol. 2008-12

[7]
Stability and dynamics of polycomb target sites in Drosophila development.

PLoS Genet. 2008-9-5

[8]
Association of trxG and PcG proteins with the bxd maintenance element depends on transcriptional activity.

Development. 2008-8

[9]
The role of Polycomb-group response elements in regulation of engrailed transcription in Drosophila.

Development. 2008-2

[10]
Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins.

Proc Natl Acad Sci U S A. 2007-10-16

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索