Kockmann Tobias, Gerstung Moritz, Schlumpf Tommy, Xhinzhou Zhu, Hess Daniel, Beerenwinkel Niko, Beisel Christian, Paro Renato
Genome Biol. 2013 Feb 25;14(2):R18. doi: 10.1186/gb-2013-14-2-r18.
The question of how cells re-establish gene expression states after cell division is still poorly understood. Genetic and molecular analyses have indicated that Trithorax group (TrxG) proteins are critical for the long-term maintenance of active gene expression states in many organisms. A generally accepted model suggests that TrxG proteins contribute to maintenance of transcription by protecting genes from inappropriate Polycomb group (PcG)-mediated silencing, instead of directly promoting transcription.
Here we report a physical and functional interaction in Drosophila between two members of the TrxG, the histone methyltransferase ASH1 and the bromodomain and extraterminal family protein FSH. We investigated this interface at the genome level, uncovering a widespread co-localization of both proteins at promoters and PcG-bound intergenic elements. Our integrative analysis of chromatin maps and gene expression profiles revealed that the observed ASH1-FSH binding pattern at promoters is a hallmark of active genes. Inhibition of FSH-binding to chromatin resulted in global down-regulation of transcription. In addition, we found that genes displaying marks of robust PcG-mediated repression also have ASH1 and FSH bound to their promoters.
Our data strongly favor a global coactivator function of ASH1 and FSH during transcription, as opposed to the notion that TrxG proteins impede inappropriate PcG-mediated silencing, but are dispensable elsewhere. Instead, our results suggest that PcG repression needs to overcome the transcription-promoting function of ASH1 and FSH in order to silence genes.
细胞在分裂后如何重新建立基因表达状态的问题仍未得到充分理解。遗传和分子分析表明,三体胸节组(TrxG)蛋白对于许多生物体中活性基因表达状态的长期维持至关重要。一个普遍接受的模型表明,TrxG蛋白通过保护基因免受不适当的多梳蛋白组(PcG)介导的沉默来促进转录的维持,而不是直接促进转录。
在此我们报道了果蝇中TrxG的两个成员,组蛋白甲基转移酶ASH1和含溴结构域及额外末端结构域家族蛋白FSH之间的物理和功能相互作用。我们在基因组水平上研究了这种相互作用,发现这两种蛋白在启动子和与PcG结合的基因间元件上广泛共定位。我们对染色质图谱和基因表达谱的综合分析表明,在启动子处观察到的ASH1 - FSH结合模式是活性基因的一个标志。抑制FSH与染色质的结合导致转录的全局下调。此外,我们发现显示出强大的PcG介导的抑制标记的基因,其启动子上也结合有ASH1和FSH。
我们的数据强烈支持ASH1和FSH在转录过程中具有全局共激活功能,这与TrxG蛋白阻碍不适当的PcG介导的沉默但在其他方面可有可无的观点相反。相反,我们的结果表明,PcG抑制需要克服ASH1和FSH的转录促进功能才能使基因沉默。