Université Joseph Fourier-Grenoble 1, Institut National de la Santé et de la Recherche Médicale, Institut Albert Bonniot, U823, Site Santé-BP 170, 38042 Grenoble Cedex 9, France.
Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1936-41. doi: 10.1073/pnas.0904497107. Epub 2010 Jan 13.
Chromatin remodelers are sophisticated nano-machines that are able to alter histone-DNA interactions and to mobilize nucleosomes. Neither the mechanism of their action nor the conformation of the remodeled nucleosomes are, however, yet well understood. We have studied the mechanism of Remodels Structure of Chromatin (RSC)-nucleosome mobilization by using high-resolution microscopy and biochemical techniques. Atomic force microscopy and electron cryomicroscopy (EC-M) analyses show that two types of products are generated during the RSC remodeling: (i) stable non-mobilized particles, termed remosomes that contain about 180 bp of DNA associated with the histone octamer and, (ii) mobilized particles located at the end of DNA. EC-M reveals that individual remosomes exhibit a distinct, variable, highly-irregular DNA trajectory. The use of the unique "one pot assays" for studying the accessibility of nucleosomal DNA towards restriction enzymes, DNase I footprinting and ExoIII mapping demonstrate that the histone-DNA interactions within the remosomes are strongly perturbed, particularly in the vicinity of the nucleosome dyad. The data suggest a two-step mechanism of RSC-nucleosome remodeling consisting of an initial formation of a remosome followed by mobilization. In agreement with this model, we show experimentally that the remosomes are intermediate products generated during the first step of the remodeling reaction that are further efficiently mobilized by RSC.
染色质重塑因子是复杂的纳米机器,能够改变组蛋白-DNA 相互作用并动员核小体。然而,它们的作用机制和重塑核小体的构象尚不完全清楚。我们使用高分辨率显微镜和生化技术研究了 Remodels Structure of Chromatin (RSC)-核小体动员的机制。原子力显微镜和电子冷冻显微镜 (EC-M) 分析表明,在 RSC 重塑过程中会产生两种类型的产物:(i) 稳定的未动员颗粒,称为 remosomes,包含约 180 bp 的与组蛋白八聚体结合的 DNA,以及 (ii) 位于 DNA 末端的动员颗粒。EC-M 显示,单个 remosomes 表现出独特的、可变的、高度不规则的 DNA 轨迹。使用独特的“一锅法”研究核小体 DNA 对限制酶、DNase I 足迹和 ExoIII 作图的可及性,证明了 remosomes 内的组蛋白-DNA 相互作用受到强烈干扰,特别是在核小体二分体附近。数据表明 RSC-核小体重塑的两步机制,包括 remosome 的初始形成,随后是动员。根据该模型,我们实验表明,remosomes 是重塑反应第一步中产生的中间产物,进一步由 RSC 有效地动员。