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链霉菌 A3(2)中表异长春花烯合酶的结构,新型萜类环化模板的平台。

Structure of epi-isozizaene synthase from Streptomyces coelicolor A3(2), a platform for new terpenoid cyclization templates.

机构信息

Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, USA.

出版信息

Biochemistry. 2010 Mar 2;49(8):1787-97. doi: 10.1021/bi902088z.

DOI:10.1021/bi902088z
PMID:20131801
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2840623/
Abstract

The X-ray crystal structure of recombinant epi-isozizaene synthase (EIZS), a sesquiterpene cyclase from Streptomyces coelicolor A3(2), has been determined at 1.60 A resolution. Specifically, the structure of wild-type EIZS is that of its closed conformation in complex with three Mg(2+) ions, inorganic pyrophosphate (PP(i)), and the benzyltriethylammonium cation (BTAC). Additionally, the structure of D99N EIZS has been determined in an open, ligand-free conformation at 1.90 A resolution. Comparison of these two structures provides the first view of conformational changes required for substrate binding and catalysis in a bacterial terpenoid cyclase. Moreover, the binding interactions of BTAC may mimic those of a carbocation intermediate in catalysis. Accordingly, the aromatic rings of F95, F96, and F198 appear to be well-oriented to stabilize carbocation intermediates in the cyclization cascade through cation-pi interactions. Mutagenesis of aromatic residues in the enzyme active site results in the production of alternative sesquiterpene product arrays due to altered modes of stabilization of carbocation intermediates as well as altered templates for the cyclization of farnesyl diphosphate. Accordingly, the 1.64 A resolution crystal structure of F198A EIZS in a complex with three Mg(2+) ions, PP(i), and BTAC reveals an alternative binding orientation of BTAC; alternative binding orientations of a carbocation intermediate could lead to the formation of alternative products. Finally, the crystal structure of wild-type EIZS in a complex with four Hg(2+) ions has been determined at 1.90 A resolution, showing that metal binding triggers a significant conformational change of helix G to cap the active site.

摘要

重组表异泽兰烯合酶(EIZS)的 X 射线晶体结构,来自于变铅青链霉菌 A3(2) 的一种倍半萜环化酶,已在 1.60 A 分辨率下确定。具体而言,野生型 EIZS 的结构为其与三个 Mg(2+) 离子、无机焦磷酸(PP(i))和苄基三乙基铵阳离子(BTAC)形成的封闭构象。此外,D99N EIZS 的结构已在 1.90 A 分辨率下确定为开放的、无配体的构象。这两种结构的比较提供了细菌萜烯环化酶中底物结合和催化所需构象变化的第一个视图。此外,BTAC 的结合相互作用可能模拟催化过程中碳正离子中间体。因此,F95、F96 和 F198 的芳环似乎很好地定向,通过阳离子-π 相互作用稳定环化级联中的碳正离子中间体。酶活性位点中芳香残基的突变导致产生替代的倍半萜烯产物阵列,这是由于碳正离子中间体的稳定模式以及法呢基二磷酸环化的模板发生改变。因此,F198A EIZS 与三个 Mg(2+) 离子、PP(i) 和 BTAC 形成的复合物的 1.64 A 分辨率晶体结构揭示了 BTAC 的替代结合取向;碳正离子中间体的替代结合取向可能导致形成替代产物。最后,野生型 EIZS 与四个 Hg(2+) 离子形成的复合物的 X 射线晶体结构已在 1.90 A 分辨率下确定,表明金属结合触发了 G 螺旋的显著构象变化,以覆盖活性位点。

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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Crystal structure of (+)-delta-cadinene synthase from Gossypium arboreum and evolutionary divergence of metal binding motifs for catalysis.来自陆地棉的(+)-δ-杜松烯合酶的晶体结构及催化作用中金属结合基序的进化分歧
Biochemistry. 2009 Jul 7;48(26):6175-83. doi: 10.1021/bi900483b.
3
Consequences of conformational preorganization in sesquiterpene biosynthesis: theoretical studies on the formation of the bisabolene, curcumene, acoradiene, zizaene, cedrene, duprezianene, and sesquithuriferol sesquiterpenes.
双功能萜烯环化酶-磷酸酶——地锦烯醇合酶的晶体结构与催化机制
bioRxiv. 2025 Feb 12:2025.02.11.637696. doi: 10.1101/2025.02.11.637696.
4
Engineering terpene synthases and their substrates for the biocatalytic production of terpene natural products and analogues.工程化萜类合酶及其底物用于萜类天然产物和类似物的生物催化生产。
Chem Commun (Camb). 2025 Feb 4;61(12):2468-2483. doi: 10.1039/d4cc05785f.
5
Molecular insights into a distinct class of terpenoid cyclases.对一类独特萜类环化酶的分子见解。
Nat Commun. 2025 Jan 2;16(1):207. doi: 10.1038/s41467-024-55717-6.
6
Structure and Function of Sabinene Synthase, a Monoterpene Cyclase That Generates a Highly Strained [3.1.0] Bicyclic Product.桧烯合酶的结构与功能,一种生成高度张力[3.1.0]双环产物的单萜环化酶。
Biochemistry. 2024 Dec 3;63(23):3147-3159. doi: 10.1021/acs.biochem.4c00476. Epub 2024 Nov 11.
7
Single Point Mutation Abolishes Water Capture in Germacradien-4-ol Synthase.单点突变消除了大根香叶烯-4-醇合酶中的水捕获功能。
Chembiochem. 2024 Dec 2;25(23):e202400290. doi: 10.1002/cbic.202400290. Epub 2024 Aug 7.
8
Mining methods and typical structural mechanisms of terpene cyclases.萜烯环化酶的挖掘方法及典型结构机制
Bioresour Bioprocess. 2021 Jul 28;8(1):66. doi: 10.1186/s40643-021-00421-2.
9
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Biochemistry. 2024 Mar 19;63(6):797-805. doi: 10.1021/acs.biochem.3c00681. Epub 2024 Feb 29.
10
Decoding Catalysis by Terpene Synthases.萜类合酶对催化作用的解码
ACS Catal. 2023 Sep 15;13(19):12774-12802. doi: 10.1021/acscatal.3c03047. eCollection 2023 Oct 6.
倍半萜生物合成中构象预组织的后果:关于红没药烯、莪术烯、菖蒲二烯、蛇床烯、雪松烯、杜普雷齐烯和倍半瑟瑞醇倍半萜形成的理论研究
J Am Chem Soc. 2009 Jun 17;131(23):7999-8015. doi: 10.1021/ja9005332.
4
Biosynthesis of the sesquiterpene antibiotic albaflavenone in Streptomyces coelicolor. Mechanism and stereochemistry of the enzymatic formation of epi-isozizaene.天蓝色链霉菌中倍半萜抗生素白黄皮烯的生物合成。表异紫穗槐烯酶促形成的机制与立体化学。
J Am Chem Soc. 2009 May 13;131(18):6332-3. doi: 10.1021/ja901313v.
5
Quantitative exploration of the catalytic landscape separating divergent plant sesquiterpene synthases.对区分不同植物倍半萜合酶的催化格局进行定量探索。
Nat Chem Biol. 2008 Oct;4(10):617-23. doi: 10.1038/nchembio.113. Epub 2008 Sep 7.
6
X-ray crystallographic studies of substrate binding to aristolochene synthase suggest a metal ion binding sequence for catalysis.对底物与马兜铃烯合酶结合的X射线晶体学研究表明了催化作用的金属离子结合序列。
J Biol Chem. 2008 May 30;283(22):15431-9. doi: 10.1074/jbc.M800659200. Epub 2008 Apr 2.
7
Evolving biosynthetic tangos negotiate mechanistic landscapes.不断演变的生物合成探戈舞步穿梭于机制图景之中。
Nat Chem Biol. 2008 Apr;4(4):217-22. doi: 10.1038/nchembio0408-217.
8
Unearthing the roots of the terpenome.探寻萜类化合物组的根源。
Curr Opin Chem Biol. 2008 Apr;12(2):141-50. doi: 10.1016/j.cbpa.2007.12.008. Epub 2008 Feb 20.
9
Biosynthesis of the sesquiterpene antibiotic albaflavenone in Streptomyces coelicolor A3(2).天蓝色链霉菌A3(2)中倍半萜抗生素白黄链菌素的生物合成
J Biol Chem. 2008 Mar 28;283(13):8183-9. doi: 10.1074/jbc.M710421200. Epub 2008 Jan 30.
10
Version 1.2 of the Crystallography and NMR system.晶体学与核磁共振系统1.2版本。
Nat Protoc. 2007;2(11):2728-33. doi: 10.1038/nprot.2007.406.