Blank Patrick N, Barrow Golda H, Chou Wayne K W, Duan Lian, Cane David E, Christianson David W
Roy and Diana Vagelos Laboratories, Department of Chemistry, University of Pennsylvania , Philadelphia, Pennsylvania 19104-6323, United States.
Department of Chemistry, Box H, Brown University , Providence, Rhode Island 02912-9108, United States.
Biochemistry. 2017 Oct 31;56(43):5798-5811. doi: 10.1021/acs.biochem.7b00895. Epub 2017 Oct 17.
The sesquiterpene cyclase epi-isozizaene synthase (EIZS) catalyzes the cyclization of farnesyl diphosphate to form the tricyclic hydrocarbon precursor of the antibiotic albaflavenone. The hydrophobic active site pocket of EIZS serves as a template as it binds and chaperones the flexible substrate and carbocation intermediates through the conformations required for a multistep reaction sequence. We previously demonstrated that the substitution of hydrophobic residues with other hydrophobic residues remolds the template and expands product chemodiversity [Li, R., Chou, W. K. W., Himmelberger, J. A., Litwin, K. M., Harris, G. G., Cane, D. E., and Christianson, D. W. (2014) Biochemistry 53, 1155-1168]. Here, we show that the substitution of hydrophobic residues-specifically, Y69, F95, F96, and W203-with polar side chains also yields functional enzyme catalysts that expand product chemodiversity. Fourteen new EIZS mutants are reported that generate product arrays in which eight new sesquiterpene products have been identified. Of note, some mutants generate acyclic and cyclic hydroxylated products, suggesting that the introduction of polarity in the hydrophobic pocket facilitates the binding of water capable of quenching carbocation intermediates. Furthermore, the substitution of polar residues for F96 yields high-fidelity sesquisabinene synthases. Crystal structures of selected mutants reveal that residues defining the three-dimensional contour of the hydrophobic pocket can be substituted without triggering significant structural changes elsewhere in the active site. Thus, more radical nonpolar-polar amino acid substitutions should be considered when terpenoid cyclase active sites are remolded by mutagenesis with the goal of exploring and expanding product chemodiversity.
倍半萜环化酶表异构紫穗槐烯合酶(EIZS)催化法尼基二磷酸环化形成抗生素白黄青霉素的三环烃前体。EIZS的疏水活性位点口袋作为模板,在多步反应序列所需的构象中结合并陪伴柔性底物和碳正离子中间体。我们之前证明,用其他疏水残基取代疏水残基会重塑模板并扩大产物化学多样性[Li, R., Chou, W. K. W., Himmelberger, J. A., Litwin, K. M., Harris, G. G., Cane, D. E., and Christianson, D. W. (2014) Biochemistry 53, 1155 - 1168]。在此,我们表明用极性侧链取代疏水残基——具体为Y69、F95、F96和W203——也能产生功能性酶催化剂,扩大产物化学多样性。报道了14个新的EIZS突变体,它们产生的产物阵列中已鉴定出8种新的倍半萜产物。值得注意的是,一些突变体产生无环和环状羟基化产物,这表明在疏水口袋中引入极性有助于结合能够淬灭碳正离子中间体的水。此外,用极性残基取代F96可产生高保真的倍半萨宾烯合酶。所选突变体的晶体结构表明,定义疏水口袋三维轮廓的残基可以被取代,而不会在活性位点的其他地方引发显著的结构变化。因此,当通过诱变重塑萜类环化酶活性位点以探索和扩大产物化学多样性时,应考虑更激进的非极性 - 极性氨基酸取代。