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一种独特的双功能萜烯环化酶-磷酸酶——簇花草醇合酶的晶体结构与催化机制

Crystal structure and catalytic mechanism of drimenol synthase, an unusual bifunctional terpene cyclase-phosphatase.

作者信息

Osika Kristin R, Gaynes Matthew N, Christianson David W

机构信息

Department of Chemistry, Roy and Diana Vagelos Laboratories, University of Pennsylvania, Philadelphia, PA 19104-6323.

出版信息

Proc Natl Acad Sci U S A. 2025 Jul;122(26):e2506584122. doi: 10.1073/pnas.2506584122. Epub 2025 Jun 26.

Abstract

Drimenol synthase from (AsDMS) is a highly unusual chimera that integrates two distinct, sequential isoprenoid processing activities within a single polypeptide chain. AsDMS catalyzes the class II cyclization of farnesyl diphosphate (FPP) to form drimenyl diphosphate, which then undergoes enzyme-catalyzed hydrolysis to yield drimenol, a bioactive sesquiterpene alcohol with antifungal and anticancer properties. Here, we report the X-ray crystal structures of AsDMS and its complex with a sesquiterpene thiol. The AsDMS structure exhibits a didomain architecture consisting of a terpene cyclase β domain and a haloacid dehalogenase-like phosphatase domain, with two distinct active sites located on opposite sides of the protein. Mechanistic studies show that dephosphorylation of the drimenyl diphosphate intermediate proceeds through stepwise hydrolysis such that two equivalents of inorganic phosphate rather than inorganic pyrophosphate are coproducts of the reaction sequence. When the AsDMS reaction is performed in HO, O is not incorporated into drimenol, indicating that the hydroxyl oxygen of drimenol originates from the prenyl oxygen of FPP rather than a water molecule from bulk solution. These results correct a mechanistic proposal previously advanced by another group. Surprisingly, AsDMS exhibits substrate promiscuity, catalyzing the conversion of the slowly reactive substrate mimic farnesyl--thiolodiphosphate into cyclic and linear sesquiterpene products. Structural and mechanistic insights gained from AsDMS illustrate the functional diversity of terpene biosynthetic enzymes and provide a foundation for engineering "designer cyclase" assemblies capable of generating a wide variety of terpenoid products.

摘要

来自[具体来源未提及]的菖蒲烯醇合酶(AsDMS)是一种非常独特的嵌合体,它在单一多肽链中整合了两种不同的、连续的类异戊二烯加工活性。AsDMS催化法呢基二磷酸(FPP)的II类环化反应,形成菖蒲烯基二磷酸,然后该产物经酶催化水解生成菖蒲烯醇,这是一种具有抗真菌和抗癌特性的生物活性倍半萜醇。在此,我们报道了AsDMS及其与倍半萜硫醇复合物的X射线晶体结构。AsDMS结构呈现出一种双结构域架构,由一个萜烯环化酶β结构域和一个卤代酸脱卤酶样磷酸酶结构域组成,在蛋白质的相对两侧有两个不同的活性位点。机理研究表明,菖蒲烯基二磷酸中间体的去磷酸化通过逐步水解进行,使得两当量的无机磷酸而非无机焦磷酸是反应序列的副产物。当在H₂O中进行AsDMS反应时,O并未掺入菖蒲烯醇中,这表明菖蒲烯醇的羟基氧源自FPP的异戊烯基氧而非来自大量溶液中的水分子。这些结果纠正了另一研究小组先前提出的机理推测。令人惊讶的是,AsDMS表现出底物选择性,催化反应活性较低的底物类似物法呢基硫代二磷酸转化为环状和线性倍半萜产物。从AsDMS获得的结构和机理见解阐明了萜类生物合成酶的功能多样性,并为设计能够生成多种萜类产物的“定制环化酶”组件提供了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afa1/12232559/bc6083ecec90/pnas.2506584122fig01.jpg

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