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用于更准确计算烷烃水合自由能的修正电荷平衡参数

Revised Charge Equilibration Parameters for More Accurate Hydration Free Energies of Alkanes.

作者信息

Davis Joseph E, Patel Sandeep

机构信息

238 Brown Laboratory, Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA.

出版信息

Chem Phys Lett. 2010 Jan 1;484(4-6):173. doi: 10.1016/j.cplett.2009.09.061.

DOI:10.1016/j.cplett.2009.09.061
PMID:20161648
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2818315/
Abstract

We present a refined alkane charge equilibration (CHEQ) force field, improving our previously reported CHEQ alkane force field[1] to better reproduce experimental hydration free energies. Experimental hydration free energies of ethane, propane, butane, pentane, hexane, and heptane are reproduced to within 3.6% on average. We demonstrate that explicit polarization results in a shift in molecular dipole moment for water molecules associated with the alkane molecule. We also show that our new parameters do not have a significant effect on the alkane-water interactions as measured by the radial distribution function (RDF).

摘要

我们提出了一种改进的烷烃电荷平衡(CHEQ)力场,对我们之前报道的CHEQ烷烃力场[1]进行了改进,以更好地再现实验测得的水合自由能。乙烷、丙烷、丁烷、戊烷、己烷和庚烷的实验水合自由能平均再现误差在3.6%以内。我们证明,明确的极化作用会导致与烷烃分子相关的水分子的分子偶极矩发生偏移。我们还表明,通过径向分布函数(RDF)测量,我们的新参数对烷烃-水相互作用没有显著影响。

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本文引用的文献

1
Additive and Classical Drude Polarizable Force Fields for Linear and Cyclic Ethers.用于线性和环状醚的加性和经典德鲁德可极化力场。
J Chem Theory Comput. 2007 May;3(3):1120-33. doi: 10.1021/ct600350s.
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Properties of water along the liquid-vapor coexistence curve via molecular dynamics simulations using the polarizable TIP4P-QDP-LJ water model.使用可极化的TIP4P-QDP-LJ水模型通过分子动力学模拟研究水在液-气共存曲线上的性质。
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Molecular dynamics simulations of a DMPC bilayer using nonadditive interaction models.使用非加和相互作用模型对二肉豆蔻酰磷脂酰胆碱双层进行分子动力学模拟。
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J Chem Theory Comput. 2007;3(6):1927-1946. doi: 10.1021/ct700100a.
5
Revised charge equilibration potential for liquid alkanes.液态烷烃的修正电荷平衡电位。
J Phys Chem B. 2008 Jul 17;112(28):8298-310. doi: 10.1021/jp8003129. Epub 2008 Jun 21.
6
Hydration free energies of monovalent ions in transferable intermolecular potential four point fluctuating charge water: an assessment of simulation methodology and force field performance and transferability.可转移分子间势四点波动电荷水中单价离子的水合自由能:模拟方法、力场性能及可转移性评估
J Chem Phys. 2007 Aug 14;127(6):064509. doi: 10.1063/1.2771550.
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Theoretical and computational models of biological ion channels.生物离子通道的理论与计算模型
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Polarizable empirical force field for alkanes based on the classical Drude oscillator model.基于经典德鲁德振子模型的烷烃可极化经验力场。
J Phys Chem B. 2005 Oct 13;109(40):18988-99. doi: 10.1021/jp053182y.
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Revisiting the hexane-water interface via molecular dynamics simulations using nonadditive alkane-water potentials.使用非加和性烷烃-水势通过分子动力学模拟重新审视己烷-水界面。
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