Suppr超能文献

基因组瑰宝:SINE RNA 调控 mRNA 的生成。

Genomic gems: SINE RNAs regulate mRNA production.

机构信息

Department of Chemistry and Biochemistry, University of Colorado, Boulder, 80309-0215, USA.

出版信息

Curr Opin Genet Dev. 2010 Apr;20(2):149-55. doi: 10.1016/j.gde.2010.01.004. Epub 2010 Feb 20.

Abstract

Mammalian short interspersed elements (SINEs) are abundant retrotransposons that have long been considered junk DNA; however, RNAs transcribed from mouse B2 and human Alu SINEs have recently been found to control mRNA production at multiple levels. Upon cell stress B2 and Alu RNAs bind RNA polymerase II (Pol II) and repress transcription of some protein-encoding genes. Bi-directional transcription of a B2 SINE establishes a boundary that places the growth hormone locus in a permissive chromatin state during mouse development. Alu RNAs embedded in Pol II transcripts can promote evolution and proteome diversity through exonization via alternative splicing. Given the diverse means by which SINE encoded RNAs impact production of mRNAs, this genomic junk is proving to contain hidden gems.

摘要

哺乳动物短散在元件(SINEs)是丰富的逆转录转座子,长期以来一直被认为是垃圾 DNA;然而,最近发现从小鼠 B2 和人类 Alu SINE 转录的 RNA 可以在多个层面控制 mRNA 的产生。在细胞应激下,B2 和 Alu RNA 与 RNA 聚合酶 II(Pol II)结合并抑制一些编码蛋白基因的转录。B2 SINE 的双向转录建立了一个边界,在小鼠发育过程中将生长激素基因座置于允许染色质状态。嵌入 Pol II 转录本中的 Alu RNA 可以通过选择性剪接的外显子化促进进化和蛋白质组多样性。鉴于 SINE 编码的 RNA 影响 mRNA 产生的多种方式,这种基因组垃圾正在被证明包含隐藏的瑰宝。

相似文献

1
Genomic gems: SINE RNAs regulate mRNA production.
Curr Opin Genet Dev. 2010 Apr;20(2):149-55. doi: 10.1016/j.gde.2010.01.004. Epub 2010 Feb 20.
2
InvAluable junk: the cellular impact and function of Alu and B2 RNAs.
IUBMB Life. 2009 Aug;61(8):831-7. doi: 10.1002/iub.227.
4
Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock.
Mol Cell. 2008 Feb 29;29(4):499-509. doi: 10.1016/j.molcel.2007.12.013.
5
Alu mobile elements: from junk DNA to genomic gems.
Scientifica (Cairo). 2012;2012:545328. doi: 10.6064/2012/545328. Epub 2012 Dec 16.
6
Transposable B2 SINE elements can provide mobile RNA polymerase II promoters.
Nat Genet. 2001 May;28(1):77-81. doi: 10.1038/ng0501-77.
7
Investigating the Potential Roles of SINEs in the Human Genome.
Annu Rev Genomics Hum Genet. 2021 Aug 31;22:199-218. doi: 10.1146/annurev-genom-111620-100736. Epub 2021 Apr 1.
9
Short interspersed nuclear element (SINE)-mediated post-transcriptional effects on human and mouse gene expression: SINE-UP for active duty.
Philos Trans R Soc Lond B Biol Sci. 2020 Mar 30;375(1795):20190344. doi: 10.1098/rstb.2019.0344. Epub 2020 Feb 10.
10
Genome-wide mapping of infection-induced SINE RNAs reveals a role in selective mRNA export.
Nucleic Acids Res. 2017 Jun 2;45(10):6194-6208. doi: 10.1093/nar/gkx180.

引用本文的文献

1
Analysis of RNA Transcribed by RNA Polymerase III from B2 SINEs in Mouse Cells.
Noncoding RNA. 2025 May 14;11(3):39. doi: 10.3390/ncrna11030039.
2
Ere, a Family of Short Interspersed Elements in the Genomes of Odd-Toed Ungulates (Perissodactyla).
Animals (Basel). 2024 Jul 5;14(13):1982. doi: 10.3390/ani14131982.
4
The origin of genetic and metabolic systems: Evolutionary structuralinsights.
Heliyon. 2023 Mar 11;9(3):e14466. doi: 10.1016/j.heliyon.2023.e14466. eCollection 2023 Mar.
6
SINE Insertion in the Intron of Pig May Decrease Its Expression by Acting as a Repressor.
Animals (Basel). 2021 Jun 23;11(7):1871. doi: 10.3390/ani11071871.
7
A heat shock-responsive lncRNA acts as a HSF1-directed transcriptional brake via mA modification.
Proc Natl Acad Sci U S A. 2021 Jun 22;118(25). doi: 10.1073/pnas.2102175118.
9
Increased Alu RNA processing in Alzheimer brains is linked to gene expression changes.
EMBO Rep. 2021 May 5;22(5):e52255. doi: 10.15252/embr.202052255. Epub 2021 Mar 1.
10
The noncoding RNA BC200 associates with polysomes to positively regulate mRNA translation in tumor cells.
J Biol Chem. 2021 Jan-Jun;296:100036. doi: 10.1074/jbc.RA120.015775. Epub 2020 Nov 24.

本文引用的文献

2
B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes.
Proc Natl Acad Sci U S A. 2009 Apr 7;106(14):5569-74. doi: 10.1073/pnas.0810738106. Epub 2009 Mar 23.
3
Alu exonization events reveal features required for precise recognition of exons by the splicing machinery.
PLoS Comput Biol. 2009 Mar;5(3):e1000300. doi: 10.1371/journal.pcbi.1000300. Epub 2009 Mar 6.
4
Pre-mRNA processing reaches back to transcription and ahead to translation.
Cell. 2009 Feb 20;136(4):688-700. doi: 10.1016/j.cell.2009.02.001.
5
Diverse splicing patterns of exonized Alu elements in human tissues.
PLoS Genet. 2008 Oct 17;4(10):e1000225. doi: 10.1371/journal.pgen.1000225.
6
Intronic Alus influence alternative splicing.
PLoS Genet. 2008 Sep 26;4(9):e1000204. doi: 10.1371/journal.pgen.1000204.
7
Beyond DNA: RNA editing and steps toward Alu exonization in primates.
J Mol Biol. 2008 Oct 10;382(3):601-9. doi: 10.1016/j.jmb.2008.07.014. Epub 2008 Jul 16.
8
The take and give between retrotransposable elements and their hosts.
Annu Rev Genet. 2008;42:587-617. doi: 10.1146/annurev.genet.42.110807.091549.
9
Boundaries. Boundaries...Boundaries???
Curr Opin Cell Biol. 2008 Jun;20(3):281-7. doi: 10.1016/j.ceb.2008.03.018. Epub 2008 Jun 2.
10
Alu element-mediated gene silencing.
EMBO J. 2008 Jun 18;27(12):1694-705. doi: 10.1038/emboj.2008.94. Epub 2008 May 22.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验