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金属阳离子与氨基酸相互作用的依赖性:Rb+与甘氨酸、丝氨酸、苏氨酸和脯氨酸的键能。

Metal cation dependence of interactions with amino acids: bond energies of Rb+ to Gly, Ser, Thr, and Pro.

机构信息

Department of Chemistry, University of Utah, 315 S. 1400 E. Rm 2020, Salt Lake City, Utah 84112, USA.

出版信息

J Phys Chem B. 2010 Mar 25;114(11):4107-14. doi: 10.1021/jp101264m.

Abstract

The interactions of rubidium cations with the four amino acids (AA), glycine (Gly), serine (Ser), threonine (Thr), and proline (Pro), are examined in detail. Experimentally, the bond energies are determined using threshold collision-induced dissociation of the Rb(+)(AA) complexes with xenon in a guided ion beam tandem mass spectrometer. Analyses of the energy dependent cross sections include consideration of unimolecular decay rates, internal energy of reactant ions, and multiple ion-molecule collisions. 0 K bond energies of 108.9 +/- 7.0, 115.7 +/- 4.9, 122.1 +/- 4.6, and 125.2 +/- 4.5 kJ/mol are determined for complexes of Rb(+) with Gly, Ser, Thr, and Pro, respectively. Quantum chemical calculations are conducted at the B3LYP, B3P86, and MP2(full) levels of theory with geometries and zero point energies calculated at the B3LYP level using both HW*/6-311+G(2d,2p) and Def2TZVP basis sets. Results obtained using the former basis sets are systematically low compared to the experimental bond energies, whereas the latter basis sets show good agreement. For Rb(+)(Gly), the ground state conformer has the rubidium ion binding to the carbonyl group of the carboxylic acid, and a similar geometry is found for Rb(+)(Pro) except the secondary nitrogen accepts the carboxylic acid hydrogen to form the zwitterionic structure. Both Rb(+)(Ser) and Rb(+)(Thr) are found to have tridentate binding at the B3LYP and MP2(full) levels, whereas the B3P86 slightly prefers binding Rb(+) at the carboxylic acid. Comparison of these results to those for the lighter alkali ions provides insight into the trends in binding affinities and structures associated with metal cation variations.

摘要

我们详细考察了铷阳离子与四种氨基酸(AA),即甘氨酸(Gly)、丝氨酸(Ser)、苏氨酸(Thr)和脯氨酸(Pro)的相互作用。实验中,我们在导向离子束串联质谱仪中使用氙与 Rb(+)(AA)配合物的阈碰撞诱导解离来确定键能。对能量相关的截面进行分析时,我们考虑了单分子分解速率、反应物离子的内部能量和多次离子-分子碰撞。我们确定 Rb(+)与 Gly、Ser、Thr 和 Pro 形成的配合物的 0 K 键能分别为 108.9 ± 7.0、115.7 ± 4.9、122.1 ± 4.6 和 125.2 ± 4.5 kJ/mol。我们在 B3LYP、B3P86 和 MP2(full)理论水平上进行量子化学计算,使用 HW*/6-311+G(2d,2p)和 Def2TZVP 基组在 B3LYP 水平上计算几何形状和零点能。与实验键能相比,前一组基组的结果系统偏低,而后者基组则吻合较好。对于 Rb(+)(Gly),铷离子与羧酸的羰基结合,处于基态构象;而 Rb(+)(Pro)则是羧酸的氢与仲氮结合,形成两性离子结构,两者具有相似的几何形状。在 B3LYP 和 MP2(full)水平上,我们发现 Rb(+)(Ser)和 Rb(+)(Thr)都具有三齿配位,而 B3P86 略微倾向于在羧酸处结合 Rb(+)。将这些结果与较轻的碱金属离子的结果进行比较,可以深入了解与金属阳离子变化相关的结合亲和力和结构趋势。

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