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金属阳离子与氨基酸相互作用的依赖性:Cs+与甘氨酸、脯氨酸、丝氨酸、苏氨酸和半胱氨酸的键能。

Metal cation dependence of interactions with amino acids: bond energies of Cs+ to Gly, Pro, Ser, Thr, and Cys.

机构信息

Department of Chemistry, 315 South 1400 East Room 2020, University of Utah, Salt Lake City, Utah 84112, USA.

出版信息

J Phys Chem A. 2012 Apr 26;116(16):3989-99. doi: 10.1021/jp3012766. Epub 2012 Apr 18.

DOI:10.1021/jp3012766
PMID:22452793
Abstract

The interactions of cesium cations with five amino acids (AA) including glycine (Gly), proline (Pro), serine (Ser), threonine (Thr), and cysteine (Cys) are examined in detail. Experimentally, the bond dissociation energies (BDEs) are determined using threshold collision-induced dissociation of the Cs(+)(AA) complexes with xenon in a guided ion beam tandem mass spectrometer. Analyses of the energy-dependent cross sections include consideration of unimolecular decay rates, internal energy of the reactant ions, and multiple ion-neutral collisions. Bond dissociation energies (0 K) of 93.3 ± 2.5, 107.9 ± 4.6, 102.3 ± 4.1, 105.4 ± 4.3, and 96.8 ± 4.2 kJ/mol are determined for complexes of Cs(+) with Gly, Pro, Ser, Thr, and Cys, respectively. Quantum chemical calculations are conducted at the B3LYP, B3P86, MP2(full), and M06 levels of theory with geometries and zero-point energies calculated at the B3LYP level using both HW*/6-311+G(2d,2p) and def2-TZVPPD basis sets. Results obtained using the former basis sets are systematically low compared to the experimental bond energies, whereas the latter basis sets show good agreement. For Cs(+)(Gly), theory predicts the ground-state conformer has the cesium cation binding to the carbonyl group of the carboxylic acid. For Cs(+)(Pro), the secondary nitrogen accepts the carboxylic acid hydrogen to form the zwitterionic structure, and the metal cation binds to both oxygens. Cs(+)(Ser), Cs(+)(Thr), and Cs(+)(Cys) are found to have tridentate binding at the MP2(full) level, whereas the density functional approaches slightly prefer bidentate binding of Cs(+) at the carboxylic acid moiety. Comparison of these results to those for the smaller alkali cations provides insight into the trends in binding affinities and structures associated with metal cation variations.

摘要

详细考察了铯阳离子与五种氨基酸(AA)包括甘氨酸(Gly)、脯氨酸(Pro)、丝氨酸(Ser)、苏氨酸(Thr)和半胱氨酸(Cys)的相互作用。实验上,使用氙气在导向离子束串联质谱仪中碰撞诱导解离 Cs(+)(AA)配合物,确定键离解能(BDE)。对能量依赖的截面的分析包括考虑单分子衰变率、反应物离子的内部能量和多个离子-中性碰撞。确定了 Cs(+)与 Gly、Pro、Ser、Thr 和 Cys 形成配合物的键离解能(0 K)分别为 93.3 ± 2.5、107.9 ± 4.6、102.3 ± 4.1、105.4 ± 4.3 和 96.8 ± 4.2 kJ/mol。在 B3LYP、B3P86、MP2(full) 和 M06 理论水平上进行量子化学计算,使用 HW*/6-311+G(2d,2p) 和 def2-TZVPPD 基组计算 B3LYP 水平上的几何形状和零点能。与实验键能相比,使用前一个基组的结果系统地较低,而后者基组则显示出良好的一致性。对于 Cs(+)(Gly),理论预测基态构象是铯阳离子与羧酸的羰基结合。对于 Cs(+)(Pro),次级氮接受羧酸的氢以形成两性离子结构,金属阳离子与两个氧结合。在 MP2(full)水平上发现 Cs(+)(Ser)、Cs(+)(Thr)和 Cs(+)(Cys)具有三齿结合,而密度泛函方法略微倾向于羧酸部分的 Cs(+)的双齿结合。将这些结果与较小的碱金属阳离子进行比较,为金属阳离子变化引起的结合亲和力和结构趋势提供了深入了解。

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