Armentrout P B, Yang Bo, Rodgers M T
Department of Chemistry, University of Utah , 315 South 1400 E, Room 2020, Salt Lake City, Utah 84112, United States.
J Phys Chem B. 2014 Apr 24;118(16):4300-14. doi: 10.1021/jp5001754. Epub 2014 Feb 28.
Metal cation-amino acid interactions are key components controlling the secondary structure and biological function of proteins, enzymes, and macromolecular complexes comprising these species. Determination of pairwise interactions of alkali metal cations with amino acids provides a thermodynamic vocabulary that begins to quantify these fundamental processes. In the present work, we expand a systematic study of such interactions by examining rubidium and cesium cations binding with the acidic amino acids (AA), aspartic acid (Asp) and glutamic acid (Glu), and their amide derivatives, asparagine (Asn) and glutamine (Gln). These eight complexes are formed using electrospray ionization and their bond dissociation energies (BDEs) are determined experimentally using threshold collision-induced dissociation with xenon in a guided ion beam tandem mass spectrometer. Analyses of the energy-dependent cross sections include consideration of unimolecular decay rates, internal energy of the reactant ions, and multiple ion-neutral collisions. Quantum chemical calculations are conducted at the B3LYP, MP2(full), and M06 levels of theory using def2-TZVPPD basis sets, with results showing reasonable agreement with experiment. At 0 and 298 K, most levels of theory predict that the ground-state conformers for M(+)(Asp) and M(+)(Asn) involve tridentate binding of the metal cation to the backbone carbonyl, amino, and side-chain carbonyl groups, although tridentate binding to the carboxylic acid group and side-chain carbonyl is competitive for M(+)(Asn). For the two longer side-chain amino acids, Glu and Gln, multiple structures are competitive. A comparison of these results to those for the smaller alkali cations, Na(+) and K(+), provides insight into the trends in binding energies associated with the molecular polarizability and dipole moment of the side chain. For all four metal cations, the BDEs are inversely correlated with the size of the metal cation and follow the order Asp < Glu < Asn < Gln.
金属阳离子与氨基酸的相互作用是控制蛋白质、酶以及包含这些物质的大分子复合物二级结构和生物学功能的关键组成部分。确定碱金属阳离子与氨基酸的成对相互作用提供了一种热力学词汇表,开始对这些基本过程进行量化。在本工作中,我们通过研究铷和铯阳离子与酸性氨基酸(AA)、天冬氨酸(Asp)和谷氨酸(Glu)及其酰胺衍生物天冬酰胺(Asn)和谷氨酰胺(Gln)的结合,扩展了对此类相互作用的系统研究。使用电喷雾电离形成这八种配合物,并在导向离子束串联质谱仪中通过与氙的阈值碰撞诱导解离实验测定它们的键解离能(BDE)。对能量相关截面的分析包括考虑单分子衰变率、反应物离子的内能以及多次离子 - 中性碰撞。使用def2 - TZVPPD基组在B3LYP、MP2(全)和M06理论水平上进行量子化学计算,结果与实验显示出合理的一致性。在0和298 K时,大多数理论水平预测M(+)(Asp)和M(+)(Asn)的基态构象涉及金属阳离子与主链羰基、氨基和侧链羰基的三齿结合,尽管对于M(+)(Asn),与羧酸基团和侧链羰基的三齿结合具有竞争性。对于两种侧链较长的氨基酸Glu和Gln,多种结构具有竞争性。将这些结果与较小的碱金属阳离子Na(+)和K(+)的结果进行比较,有助于深入了解与侧链分子极化率和偶极矩相关的结合能趋势。对于所有四种金属阳离子,BDE与金属阳离子的大小呈负相关,且遵循Asp < Glu < Asn < Gln的顺序。