利用归一化概率图谱和增强估计,对 CT 图像中的肝脏和脾脏进行自动分割和定量。
Automated segmentation and quantification of liver and spleen from CT images using normalized probabilistic atlases and enhancement estimation.
机构信息
Imaging Biomarkers and Computer-Aided Diagnosis Laboratory, Radiology and Imaging Sciences, Clinical Center National Institutes of Health, 10 Center Drive Bethesda, Maryland 20892, USA.
出版信息
Med Phys. 2010 Feb;37(2):771-83. doi: 10.1118/1.3284530.
PURPOSE
To investigate the potential of the normalized probabilistic atlases and computer-aided medical image analysis to automatically segment and quantify livers and spleens for extracting imaging biomarkers (volume and height).
METHODS
A clinical tool was developed to segment livers and spleen from 257 abdominal contrast-enhanced CT studies. There were 51 normal livers, 44 normal spleens, 128 splenomegaly, 59 hepatomegaly, and 23 partial hepatectomy cases. 20 more contrast-enhanced CT scans from a public site with manual segmentations of mainly pathological livers were used to test the method. Data were acquired on a variety of scanners from different manufacturers and at varying resolution. Probabilistic atlases of livers and spleens were created using manually segmented data from ten noncontrast CT scans (five male and five female). The organ locations were modeled in the physical space and normalized to the position of an anatomical landmark, the xiphoid. The construction and exploitation of liver and spleen atlases enabled the automated quantifications of liver/spleen volumes and heights (midhepatic liver height and cephalocaudal spleen height) from abdominal CT data. The quantification was improved incrementally by a geodesic active contour, patient specific contrast-enhancement characteristics passed to an adaptive convolution, and correction for shape and location errors.
RESULTS
The livers and spleens were robustly segmented from normal and pathological cases. For the liver, the Dice/Tanimoto volume overlaps were 96.2%/92.7%, the volume/height errors were 2.2%/2.8%, the root-mean-squared error (RMSE) was 2.3 mm, and the average surface distance (ASD) was 1.2 mm. The spleen quantification led to 95.2%/91% Dice/Tanimoto overlaps, 3.3%/ 1.7% volume/height errors, 1.1 mm RMSE, and 0.7 ASD. The correlations (R2) with clinical/manual height measurements were 0.97 and 0.93 for the spleen and liver, respectively (p < 0.0001). No significant difference (p > 0.2) was found comparing interobserver and automatic-manual volume/height errors for liver and spleen.
CONCLUSIONS
The algorithm is robust to segmenting normal and enlarged spleens and livers, and in the presence of tumors and large morphological changes due to partial hepatectomy. Imaging biomarkers of the liver and spleen from automated computer-assisted tools have the potential to assist the diagnosis of abdominal disorders from routine analysis of clinical data and guide clinical management.
目的
研究规范化概率图谱和计算机辅助医学图像分析在自动分割和量化肝脏和脾脏以提取成像生物标志物(体积和高度)方面的潜力。
方法
开发了一种临床工具,用于从 257 例腹部增强 CT 研究中分割肝脏和脾脏。其中包括 51 例正常肝脏、44 例正常脾脏、128 例脾肿大、59 例肝肿大和 23 例部分肝切除术病例。还使用了来自公共站点的另外 20 个增强 CT 扫描,这些扫描的手动分割主要为病理性肝脏。数据来自不同制造商的各种扫描仪,分辨率不同。使用 10 次非对比 CT 扫描的手动分割数据(男性 5 次,女性 5 次)创建了肝脏和脾脏的概率图谱。器官位置在物理空间中建模,并归一化为解剖学标志(剑突)的位置。构建和利用肝脏和脾脏图谱,使肝脏/脾脏体积和高度(肝中叶高度和脾头足高)能够从腹部 CT 数据中自动量化。通过测地线主动轮廓、传递给自适应卷积的患者特定对比增强特征以及形状和位置误差校正,逐步提高了量化的准确性。
结果
正常和病理性病例中均能可靠地分割肝脏和脾脏。对于肝脏,Dice/Tanimoto 体积重叠率分别为 96.2%/92.7%,体积/高度误差分别为 2.2%/2.8%,均方根误差(RMSE)为 2.3mm,平均表面距离(ASD)为 1.2mm。脾脏量化的结果导致 Dice/Tanimoto 重叠率分别为 95.2%/91%,体积/高度误差分别为 3.3%/1.7%,RMSE 为 1.1mm,ASD 为 0.7mm。与临床/手动高度测量的相关性(R2)分别为 0.97 和 0.93(p<0.0001)。在脾脏和肝脏中,观察者间和自动-手动体积/高度误差之间没有发现显著差异(p>0.2)。
结论
该算法能够可靠地分割正常和肿大的脾脏和肝脏,并且能够在存在肿瘤和由于部分肝切除术导致的大形态变化的情况下进行分割。来自自动计算机辅助工具的肝脏和脾脏成像生物标志物具有辅助从常规临床数据分析诊断腹部疾病并指导临床管理的潜力。