糖苷水解酶家族 61 蛋白对木质纤维素生物质水解的刺激作用:一个庞大而神秘家族的结构与功能。

Stimulation of lignocellulosic biomass hydrolysis by proteins of glycoside hydrolase family 61: structure and function of a large, enigmatic family.

机构信息

Novozymes Inc., 1445 Drew Avenue, Davis, California 95618, USA.

出版信息

Biochemistry. 2010 Apr 20;49(15):3305-16. doi: 10.1021/bi100009p.

Abstract

Currently, the relatively high cost of enzymes such as glycoside hydrolases that catalyze cellulose hydrolysis represents a barrier to commercialization of a biorefinery capable of producing renewable transportable fuels such as ethanol from abundant lignocellulosic biomass. Among the many families of glycoside hydrolases that catalyze cellulose and hemicellulose hydrolysis, few are more enigmatic than family 61 (GH61), originally classified based on measurement of very weak endo-1,4-beta-d-glucanase activity in one family member. Here we show that certain GH61 proteins lack measurable hydrolytic activity by themselves but in the presence of various divalent metal ions can significantly reduce the total protein loading required to hydrolyze lignocellulosic biomass. We also solved the structure of one highly active GH61 protein and find that it is devoid of conserved, closely juxtaposed acidic side chains that could serve as general proton donor and nucleophile/base in a canonical hydrolytic reaction, and we conclude that the GH61 proteins are unlikely to be glycoside hydrolases. Structure-based mutagenesis shows the importance of several conserved residues for GH61 function. By incorporating the gene for one GH61 protein into a commercial Trichoderma reesei strain producing high levels of cellulolytic enzymes, we are able to reduce by 2-fold the total protein loading (and hence the cost) required to hydrolyze lignocellulosic biomass.

摘要

目前,催化纤维素水解的糖苷水解酶(如糖苷酶)成本相对较高,这是能够利用丰富的木质纤维素生物质生产可再生可运输燃料(如乙醇)的生物炼制厂商业化的障碍。在催化纤维素和半纤维素水解的许多糖苷水解酶家族中,没有比家族 61(GH61)更神秘的了,该家族最初是根据对一种家族成员中非常微弱的内切 1,4-β-D-葡聚糖酶活性的测量进行分类的。在这里,我们表明某些 GH61 蛋白本身缺乏可测量的水解活性,但在存在各种二价金属离子的情况下,它们可以显著降低水解木质纤维素生物质所需的总蛋白负载量。我们还解决了一种高度活跃的 GH61 蛋白的结构,发现它缺乏保守的、紧密相邻的酸性侧链,这些侧链可以作为典型水解反应中的通用质子供体和亲核/碱,我们得出结论,GH61 蛋白不太可能是糖苷水解酶。基于结构的突变分析表明了几个保守残基对 GH61 功能的重要性。通过将一个 GH61 蛋白的基因整合到生产高水平纤维素酶的商业里氏木霉菌株中,我们能够将水解木质纤维素生物质所需的总蛋白负载量(因此也降低了成本)降低 2 倍。

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