Suppr超能文献

单颗粒轨迹的定量分析:平均最大偏移法。

Quantitative analysis of single particle trajectories: mean maximal excursion method.

机构信息

Physics Department, Technical University of Munich, Garching, Germany.

出版信息

Biophys J. 2010 Apr 7;98(7):1364-72. doi: 10.1016/j.bpj.2009.12.4282.

Abstract

An increasing number of experimental studies employ single particle tracking to probe the physical environment in complex systems. We here propose and discuss what we believe are new methods to analyze the time series of the particle traces, in particular, for subdiffusion phenomena. We discuss the statistical properties of mean maximal excursions (MMEs), i.e., the maximal distance covered by a test particle up to time t. Compared to traditional methods focusing on the mean-squared displacement we show that the MME analysis performs better in the determination of the anomalous diffusion exponent. We also demonstrate that combination of regular moments with moments of the MME method provides additional criteria to determine the exact physical nature of the underlying stochastic subdiffusion processes. We put the methods to test using experimental data as well as simulated time series from different models for normal and anomalous dynamics such as diffusion on fractals, continuous time random walks, and fractional Brownian motion.

摘要

越来越多的实验研究采用单粒子追踪技术来探测复杂系统中的物理环境。在这里,我们提出并讨论了我们认为是分析粒子轨迹时间序列的新方法,特别是对于亚扩散现象。我们讨论了平均最大偏移(MME)的统计特性,即测试粒子在时间 t 内所覆盖的最大距离。与传统方法专注于均方位移相比,我们表明 MME 分析在确定异常扩散指数方面表现更好。我们还证明了将正则矩与 MME 方法的矩相结合,可以提供额外的标准来确定潜在随机亚扩散过程的准确物理性质。我们使用实验数据以及来自不同模型的模拟时间序列对方法进行了测试,这些模型用于模拟正常和异常动力学,例如分形上的扩散、连续时间随机行走和分数布朗运动。

相似文献

1
Quantitative analysis of single particle trajectories: mean maximal excursion method.
Biophys J. 2010 Apr 7;98(7):1364-72. doi: 10.1016/j.bpj.2009.12.4282.
3
Mechanisms underlying anomalous diffusion in the plasma membrane.
Curr Top Membr. 2015;75:167-207. doi: 10.1016/bs.ctm.2015.03.002. Epub 2015 Apr 15.
4
Geometry controlled anomalous diffusion in random fractal geometries: looking beyond the infinite cluster.
Phys Chem Chem Phys. 2015 Nov 28;17(44):30134-47. doi: 10.1039/c5cp03548a. Epub 2015 Oct 27.
5
First-passage-time processes and subordinated Schramm-Loewner evolution.
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jul;84(1 Pt 1):011134. doi: 10.1103/PhysRevE.84.011134. Epub 2011 Jul 25.
6
Spatial structure and diffusive dynamics from single-particle trajectories using spline analysis.
Biophys J. 2010 Apr 21;98(8):1712-21. doi: 10.1016/j.bpj.2009.12.4299.
7
Single particle tracking in systems showing anomalous diffusion: the role of weak ergodicity breaking.
Phys Chem Chem Phys. 2011 Feb 7;13(5):1800-12. doi: 10.1039/c0cp01879a. Epub 2011 Jan 4.
9
Random walks on the Comb model and its generalizations.
Chaos. 2007 Dec;17(4):043102. doi: 10.1063/1.2772179.
10
Mean-squared-displacement statistical test for fractional Brownian motion.
Phys Rev E. 2017 Mar;95(3-1):032110. doi: 10.1103/PhysRevE.95.032110. Epub 2017 Mar 7.

引用本文的文献

1
Physics-informed deep learning for stochastic particle dynamics estimation.
Proc Natl Acad Sci U S A. 2025 Mar 4;122(9):e2418643122. doi: 10.1073/pnas.2418643122. Epub 2025 Feb 27.
2
Computational study on the impact of linkage sequence on the structure and dynamics of lignin.
Eur Biophys J. 2024 Nov;53(7-8):405-414. doi: 10.1007/s00249-024-01720-0. Epub 2024 Sep 19.
4
Burst of hopping trafficking correlated reversible dynamic interactions between lipid droplets and mitochondria under starvation.
Exploration (Beijing). 2023 Jul 27;3(5):20230002. doi: 10.1002/EXP.20230002. eCollection 2023 Oct.
5
Dynamic switching of transcriptional regulators between two distinct low-mobility chromatin states.
Sci Adv. 2023 Jun 16;9(24):eade1122. doi: 10.1126/sciadv.ade1122. Epub 2023 Jun 14.
6
Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics.
PLoS Comput Biol. 2023 Feb 2;19(2):e1010088. doi: 10.1371/journal.pcbi.1010088. eCollection 2023 Feb.
7
Fluorescence microscopy imaging of a neurotransmitter receptor and its cell membrane lipid milieu.
Front Mol Biosci. 2022 Nov 28;9:1014659. doi: 10.3389/fmolb.2022.1014659. eCollection 2022.
8
Machine learning-informed predictions of nanoparticle mobility and fate in the mucus barrier.
APL Bioeng. 2022 Jun 21;6(2):026103. doi: 10.1063/5.0091025. eCollection 2022 Jun.
9
Detection of Anomalous Diffusion with Deep Residual Networks.
Entropy (Basel). 2021 May 22;23(6):649. doi: 10.3390/e23060649.
10
Modelling the effect of ribosome mobility on the rate of protein synthesis.
Eur Phys J E Soft Matter. 2021 Mar 8;44(2):19. doi: 10.1140/epje/s10189-021-00019-8.

本文引用的文献

1
Elucidating the origin of anomalous diffusion in crowded fluids.
Phys Rev Lett. 2009 Jul 17;103(3):038102. doi: 10.1103/PhysRevLett.103.038102. Epub 2009 Jul 15.
2
Transient anomalous diffusion of telomeres in the nucleus of mammalian cells.
Phys Rev Lett. 2009 Jul 3;103(1):018102. doi: 10.1103/PhysRevLett.103.018102. Epub 2009 Jul 2.
3
Variety in intracellular diffusion during the cell cycle.
Phys Biol. 2009 Jul 1;6(2):025015. doi: 10.1088/1478-3975/6/2/025015.
4
Quantifying hopping and jumping in facilitated diffusion of DNA-binding proteins.
Phys Rev Lett. 2009 May 8;102(18):188101. doi: 10.1103/PhysRevLett.102.188101. Epub 2009 May 4.
5
Viscoelasticity in homogeneous protein solutions.
Phys Rev Lett. 2009 Feb 6;102(5):058101. doi: 10.1103/PhysRevLett.102.058101. Epub 2009 Feb 2.
6
Event-driven power-law relaxation in weak turbulence.
Phys Rev Lett. 2009 Jan 9;102(1):014502. doi: 10.1103/PhysRevLett.102.014502. Epub 2009 Jan 5.
7
Ergodic properties of fractional Brownian-Langevin motion.
Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jan;79(1 Pt 1):011112. doi: 10.1103/PhysRevE.79.011112. Epub 2009 Jan 13.
8
Temporal analysis of active and passive transport in living cells.
Phys Rev Lett. 2008 Dec 12;101(24):248103. doi: 10.1103/PhysRevLett.101.248103.
9
Random time-scale invariant diffusion and transport coefficients.
Phys Rev Lett. 2008 Aug 1;101(5):058101. doi: 10.1103/PhysRevLett.101.058101. Epub 2008 Jul 28.
10
Nonergodicity mimics inhomogeneity in single particle tracking.
Phys Rev Lett. 2008 Jun 27;100(25):250602. doi: 10.1103/PhysRevLett.100.250602. Epub 2008 Jun 26.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验