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神经元银行:用于神经元回路编目的工具。

NeuronBank: A Tool for Cataloging Neuronal Circuitry.

机构信息

Neuroscience Institute, Georgia State University Atlanta, GA, USA.

出版信息

Front Syst Neurosci. 2010 Apr 19;4:9. doi: 10.3389/fnsys.2010.00009. eCollection 2010.

Abstract

The basic unit of any nervous system is the neuron. Therefore, understanding the operation of nervous systems ultimately requires an inventory of their constituent neurons and synaptic connectivity, which form neural circuits. The presence of uniquely identifiable neurons or classes of neurons in many invertebrates has facilitated the construction of cellular-level connectivity diagrams that can be generalized across individuals within a species. Homologous neurons can also be recognized across species. Here we describe NeuronBank.org, a web-based tool that we are developing for cataloging, searching, and analyzing neuronal circuitry within and across species. Information from a single species is represented in an individual branch of NeuronBank. Users can search within a branch or perform queries across branches to look for similarities in neuronal circuits across species. The branches allow for an extensible ontology so that additional characteristics can be added as knowledge grows. Each entry in NeuronBank generates a unique accession ID, allowing it to be easily cited. There is also an automatic link to a Wiki page allowing an encyclopedic explanation of the entry. All of the 44 previously published neurons plus one previously unpublished neuron from the mollusc, Tritonia diomedea, have been entered into a branch of NeuronBank as have 4 previously published neurons from the mollusc, Melibe leonina. The ability to organize information about neuronal circuits will make this information more accessible, ultimately aiding research on these important models.

摘要

神经系统的基本单位是神经元。因此,要了解神经系统的运作,最终需要对其组成神经元和突触连接进行清查,从而形成神经回路。许多无脊椎动物中存在可识别的独特神经元或神经元类群,这有助于构建可在物种内个体间推广的细胞级连接图。同源神经元也可以在不同物种间识别。在此,我们描述了 NeuronBank.org,这是一个我们正在开发的基于网络的工具,用于对物种内和跨物种的神经元回路进行编目、搜索和分析。单个物种的信息在 NeuronBank 的一个分支中表示。用户可以在分支内搜索,也可以在分支间执行查询,以寻找跨物种的神经元回路的相似性。分支允许使用可扩展的本体,以便随着知识的增长添加其他特征。NeuronBank 中的每个条目都会生成一个唯一的访问 ID,便于引用。还有一个自动链接到维基页面,允许对条目进行百科全书式的解释。已将 44 个先前公布的神经元中的 43 个(其中包括来自软体动物 Tritonia diomedea 的一个先前未公布的神经元)以及 4 个来自软体动物 Melibe leonina 的先前公布的神经元输入到 NeuronBank 的一个分支中。组织有关神经元回路的信息的能力将使这些信息更易于访问,最终有助于对这些重要模型的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/365e/2859812/0e355506c465/fnsys-04-00009-g001.jpg

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