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本文引用的文献

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Impact of environmental chemicals on key transcription regulators and correlation to toxicity end points within EPA's ToxCast program.环境化学物质对关键转录调控因子的影响及其与 EPA 的 ToxCast 计划中毒性终点的相关性。
Chem Res Toxicol. 2010 Mar 15;23(3):578-90. doi: 10.1021/tx900325g.
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Pharmacogenomic discovery using cell-based models.基于细胞模型的药物基因组学发现。
Pharmacol Rev. 2009 Dec;61(4):413-29. doi: 10.1124/pr.109.001461.
3
A framework for using structural, reactivity, metabolic and physicochemical similarity to evaluate the suitability of analogs for SAR-based toxicological assessments.用于使用结构、反应性、代谢和物理化学相似性来评估基于 SAR 的毒理学评估中类似物适用性的框架。
Regul Toxicol Pharmacol. 2010 Feb;56(1):67-81. doi: 10.1016/j.yrtph.2009.09.006. Epub 2009 Sep 19.
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The toxicity data landscape for environmental chemicals.环境化学品的毒性数据概况。
Environ Health Perspect. 2009 May;117(5):685-95. doi: 10.1289/ehp.0800168. Epub 2008 Dec 22.
5
Profiling the activity of environmental chemicals in prenatal developmental toxicity studies using the U.S. EPA's ToxRefDB.利用美国环境保护局的ToxRefDB对产前发育毒性研究中的环境化学物质活性进行分析。
Reprod Toxicol. 2009 Sep;28(2):209-19. doi: 10.1016/j.reprotox.2009.03.016. Epub 2009 Apr 10.
6
Multicell simulations of development and disease using the CompuCell3D simulation environment.使用CompuCell3D模拟环境对发育和疾病进行多细胞模拟。
Methods Mol Biol. 2009;500:361-428. doi: 10.1007/978-1-59745-525-1_13.
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Dose-dependent transitions in Nrf2-mediated adaptive response and related stress responses to hypochlorous acid in mouse macrophages.小鼠巨噬细胞中Nrf2介导的适应性反应及对次氯酸相关应激反应的剂量依赖性转变。
Toxicol Appl Pharmacol. 2009 Jul 1;238(1):27-36. doi: 10.1016/j.taap.2009.04.007. Epub 2009 Apr 17.
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Profiling chemicals based on chronic toxicity results from the U.S. EPA ToxRef Database.根据美国环境保护局(EPA)毒性参考数据库的慢性毒性结果对化学品进行分析。
Environ Health Perspect. 2009 Mar;117(3):392-9. doi: 10.1289/ehp.0800074. Epub 2008 Oct 20.
9
Computational toxicology: an overview of the sources of data and of modelling methods.计算毒理学:数据来源与建模方法概述
Expert Opin Drug Metab Toxicol. 2009 Jan;5(1):1-14. doi: 10.1517/17425250802660467.
10
Toxicity testing in the 21st century: implications for human health risk assessment.21世纪的毒性测试:对人类健康风险评估的影响。
Risk Anal. 2009 Apr;29(4):485-7; discussion 492-7. doi: 10.1111/j.1539-6924.2008.01168.x. Epub 2008 Dec 9.

计算毒理学:实现 21 世纪毒性测试的承诺。

Computational toxicology: realizing the promise of the toxicity testing in the 21st century.

机构信息

Department of Environmental Sciences and Engineering, School of Public Health, University of North Carolina-Chapel Hill, Chapel Hill, North Carolina 27599-7431, USA.

出版信息

Environ Health Perspect. 2010 Aug;118(8):1047-50. doi: 10.1289/ehp.1001925. Epub 2010 May 18.

DOI:10.1289/ehp.1001925
PMID:20483702
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2920091/
Abstract

BACKGROUND

The National Academies' Standing Committee on Use of Emerging Science for Environmental Health Decisions held a meeting (21-22 September 2009 in Washington, DC) titled "Computational Toxicology: From Data to Analyses to Applications." This commentary reflects on the presentations and roundtable discussions from the meeting that were designed to review the state of the art in the field and the practical applications of the new science and to provide focus to the field.

OBJECTIVES

The meeting considered two topics: the emerging data streams amenable to computational modeling and data mining, and the emerging data analysis and modeling tools.

DISCUSSION

Computational toxicology is a subdiscipline of toxicology that aims to use the mathematical, statistical, modeling, and computer science tools to better understand the mechanisms through which a given chemical induces harm and, ultimately, to be able to predict adverse effects of the toxicants on human health and/or the environment. The participants stressed the importance of computational toxicology to the future of environmental health sciences and regulatory decisions in public health; however, many challenges remain to be addressed before the findings from high-throughput screens and in silico models may be considered sufficiently robust and informative.

CONCLUSIONS

Many scientists, regulators, and the general public believe that new and better ways to assess human toxicity are now needed, and technological breakthroughs are empowering the field of toxicity assessment. Even though the application of computational toxicology to environmental health decisions requires additional efforts, the merger of the power of computers with biological information is poised to deliver new tools and knowledge.

摘要

背景

美国国家科学院环境健康决策中新兴科学利用常设委员会于 2009 年 9 月 21 日至 22 日在华盛顿特区举行了一次题为“计算毒理学:从数据到分析再到应用”的会议。本评论反映了会议的演讲和小组讨论,旨在审查该领域的最新进展和新科学的实际应用,并为该领域提供重点。

目的

会议审议了两个主题:适合计算建模和数据挖掘的新兴数据流,以及新兴数据分析和建模工具。

讨论

计算毒理学是毒理学的一个分支,旨在利用数学、统计学、建模和计算机科学工具更好地理解特定化学物质引起伤害的机制,并最终能够预测有毒物质对人类健康和/或环境的不良影响。与会者强调了计算毒理学对环境健康科学和公共卫生监管决策未来的重要性;然而,在高通量筛选和计算机模型的结果被认为足够稳健和有信息之前,仍有许多挑战需要解决。

结论

许多科学家、监管机构和公众认为,现在需要新的和更好的方法来评估人类毒性,技术突破正在增强毒性评估领域的实力。尽管将计算毒理学应用于环境健康决策需要额外的努力,但计算机的力量与生物信息的融合有望提供新的工具和知识。