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静电作用在调节疏水性相互作用和疏水性组装障碍中的作用。

Role of electrostatics in modulating hydrophobic interactions and barriers to hydrophobic assembly.

机构信息

Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA.

出版信息

J Phys Chem B. 2010 Jun 24;114(24):8107-17. doi: 10.1021/jp101995d.

Abstract

Hydrophobic effects continue to be an active area of research due to implications for a wide range of physicochemical phenomena. Molecular dynamics simulations have been used extensively in the study of such effects using various water potential models, with few studies addressing the differences between models. In particular, studies considering the explicit treatment of water polarizability are underrepresented in the literature. We present results from molecular dynamics simulations that systematically compare the dependence of large-scale hydrophobic effects on the water model. We consider three common nonpolarizable models (SPC/E, TIP3P, and TIP4P) and two common polarizable models (TIP4P-FQ and SWM4-NDP). Results highlight the similarities and differences of the different water models in the vicinity of two large hydrophobic plates. In particular, profiles of average density, density fluctuations, orientation, and hydrogen bonding show only minor differences among the water models studied. However, the potential of mean force for the hydrophobe dimerization is significantly reduced in the polarizable water systems. TIP4P-FQ shows the deepest minimum of approximately -54(+/-3) kcal/mol compared to -40(+/-3), -40(+/-2), -42(+/-3), and -45(+/-5) kcal/mol for TIP4P, TIP3P, SPC/E, and SWM4-NDP (all relative to the dissociated state). We discuss the relationship between hydrophobic association and the strength of water-water interactions in the liquid phase. Results suggest that models treating polarizability (both implicitly and explicitly) influence a stronger driving force toward hydrophobic assembly. Implications of these results, as well as prospectives on future work, are discussed.

摘要

由于对广泛的物理化学现象有影响,疏水效应仍然是一个活跃的研究领域。使用各种水势模型的分子动力学模拟已广泛用于此类效应的研究,而很少有研究涉及模型之间的差异。特别是,在文献中,考虑到水极化性的显式处理的研究较少。我们提出了分子动力学模拟的结果,这些结果系统地比较了大规模疏水效应对水模型的依赖性。我们考虑了三种常见的非极化模型(SPC/E、TIP3P 和 TIP4P)和两种常见的极化模型(TIP4P-FQ 和 SWM4-NDP)。结果突出了不同水模型在两个大疏水板附近的相似性和差异性。特别是,平均密度、密度波动、取向和氢键的分布仅在研究的水模型之间存在微小差异。然而,在极化水分子系统中,疏水分子二聚体的平均力势显著降低。与 TIP4P、TIP3P、SPC/E 和 SWM4-NDP(均相对于离解状态)相比,TIP4P-FQ 显示出大约-54(+/-3) kcal/mol 的最深最小值,而 TIP4P-FQ 则显示出-40(+/-3)、-40(+/-2)、-42(+/-3) 和-45(+/-5) kcal/mol(所有相对)。我们讨论了疏水相互作用与液相中水分子相互作用强度之间的关系。结果表明,处理极化性的模型(包括显式和隐式)会对疏水组装产生更强的驱动力。讨论了这些结果的意义以及对未来工作的展望。

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