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来自新鞘氨醇菌属KA1的咔唑1,9a-双加氧酶铁氧化还原蛋白还原酶组分的结晶及初步X射线衍射研究。

Crystallization and preliminary X-ray diffraction studies of a ferredoxin reductase component of carbazole 1,9a-dioxygenase from Novosphingobium sp. KA1.

作者信息

Umeda Takashi, Katsuki Junichi, Ashikawa Yuji, Usami Yusuke, Inoue Kengo, Noguchi Haruko, Fujimoto Zui, Yamane Hisakazu, Nojiri Hideaki

机构信息

Biotechnology Research Center, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jun 1;66(Pt 6):712-4. doi: 10.1107/S1744309110014491. Epub 2010 May 29.

Abstract

Carbazole 1,9a-dioxygenase (CARDO) is the initial enzyme of the carbazole-degradation pathway. The CARDO of Novosphingobium sp. KA1 consists of a terminal oxygenase, a putidaredoxin-type ferredoxin and a ferredoxin-NADH oxidoreductase (Red) and is classified as a class IIA Rieske oxygenase. Red from KA1 was crystallized at 278 K by the hanging-drop vapour-diffusion method using PEG 4000. The crystal diffracted to 1.58 A resolution and belonged to space group P3(2), with unit-cell parameters a = b = 92.2, c = 78.6 A, alpha = gamma = 90, beta = 120 degrees . Preliminary analysis of the X-ray diffraction data revealed that the asymmetric unit contained two Red monomers. The crystal appeared to be a merohedral twin, with a twin fraction of 0.32 and twin law (-h, -k, l).

摘要

咔唑1,9a-双加氧酶(CARDO)是咔唑降解途径的起始酶。新鞘氨醇菌属KA1的CARDO由一个末端加氧酶、一个恶臭假单胞菌型铁氧还蛋白和一个铁氧还蛋白-NADH氧化还原酶(Red)组成,被归类为IIA型里氏氧化酶。使用聚乙二醇4000通过悬滴气相扩散法在278 K下使KA1的Red结晶。晶体衍射分辨率达到1.58 Å,属于P3(2)空间群,晶胞参数a = b = 92.2,c = 78.6 Å,α = γ = 90°,β = 120°。对X射线衍射数据的初步分析表明,不对称单元包含两个Red单体。该晶体似乎是一个部分孪晶,孪晶分数为0.32,孪晶法则为(-h,-k,l)。

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