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地衣芽孢杆菌的全转录组分析揭示了热休克与铁限制刺激因子之间的重叠。

Global transcriptional analysis of Bacillus licheniformis reveals an overlap between heat shock and iron limitation stimulon.

作者信息

Nielsen Allan K, Breüner Anne, Krzystanek Marcin, Andersen Jens T, Poulsen Thomas A, Olsen Peter B, Mijakovic Ivan, Rasmussen Michael D

机构信息

Molecular Biotechnology, Novozymes A/S, Bagsvaerd, Denmark.

出版信息

J Mol Microbiol Biotechnol. 2010;18(3):162-73. doi: 10.1159/000315457. Epub 2010 Jun 8.

Abstract

In this study, we characterized the heat shock stimulon of the important industrial microorganism Bacillus licheniformis using DNA microarrays. While sharing a high degree of homology with the closely related model organism Bacillus subtilis, the heat shock stimulon of B. licheniformis exhibited several novel and unexpected features. Most notably, heat shock in B. licheniformis resulted in decreased amounts of mRNA from the ytrABCEF operon, encoding a putative acetoin uptake system, and stimulated the transcription of purine biosynthesis and iron uptake genes. Unexpectedly, deletion of the ytrEF genes did not affect acetoin uptake, but increased heat sensitivity. To investigate the connection between heat stress and iron uptake further, we analyzed the iron limitation response of B. licheniformis by DNA microarrays and concluded that the response mostly involves the genes related to iron uptake and metabolism, while the only heat shock gene affected by iron limitation was clpE. We also attempted to delete the fur gene (encoding the ferric uptake repressor), but unexpectedly found it to be essential in B. licheniformis. Using the fluorescent protein-encoding reporter gene under control of the dhb promoter, which responded to both heat shock and iron-starvation, we confirmed the overlap between these responses.

摘要

在本研究中,我们利用DNA微阵列对重要工业微生物地衣芽孢杆菌的热休克刺激子进行了表征。虽然地衣芽孢杆菌与密切相关的模式生物枯草芽孢杆菌具有高度同源性,但其热休克刺激子表现出一些新颖且出乎意料的特征。最显著的是,地衣芽孢杆菌中的热休克导致编码假定乙偶姻摄取系统的ytrABCEF操纵子的mRNA量减少,并刺激嘌呤生物合成和铁摄取基因的转录。出乎意料的是,ytrEF基因的缺失并不影响乙偶姻摄取,但增加了热敏感性。为了进一步研究热应激与铁摄取之间的联系,我们通过DNA微阵列分析了地衣芽孢杆菌的铁限制反应,得出的结论是,该反应主要涉及与铁摄取和代谢相关的基因,而受铁限制影响的唯一热休克基因是clpE。我们还试图删除fur基因(编码铁摄取阻遏物),但出乎意料地发现它在地衣芽孢杆菌中是必需的。利用受dhb启动子控制的荧光蛋白编码报告基因,该启动子对热休克和铁饥饿均有反应,我们证实了这些反应之间的重叠。

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