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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.系统发育树的置信区间:一种使用自展法的方法。
Evolution. 1985 Jul;39(4):783-791. doi: 10.1111/j.1558-5646.1985.tb00420.x.
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Genetic Variability and Phylogenetic Relationships within Trypanosoma cruzi I Isolated in Colombia Based on Miniexon Gene Sequences.基于微小外显子基因序列对哥伦比亚分离的克氏锥虫I型的遗传变异性和系统发育关系研究
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Molecular identification of Trypanosoma cruzi discrete typing units in end-stage chronic Chagas heart disease and reactivation after heart transplantation.在晚期慢性恰加斯心脏病和心脏移植后再激活的病例中,对克氏锥虫离散型单位进行分子鉴定。
Clin Infect Dis. 2010 Sep 1;51(5):485-95. doi: 10.1086/655680.
4
A new consensus for Trypanosoma cruzi intraspecific nomenclature: second revision meeting recommends TcI to TcVI.关于克氏锥虫种内命名的新共识:第二次修订会议建议采用 TcI 至 TcVI。
Mem Inst Oswaldo Cruz. 2009 Nov;104(7):1051-4. doi: 10.1590/s0074-02762009000700021.
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Current epidemiological trends for Chagas disease in Latin America and future challenges in epidemiology, surveillance and health policy.拉丁美洲恰加斯病的当前流行趋势及流行病学、监测和卫生政策方面的未来挑战。
Mem Inst Oswaldo Cruz. 2009 Jul;104 Suppl 1:17-30. doi: 10.1590/s0074-02762009000900005.
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Alternative lifestyles: the population structure of Trypanosoma cruzi.替代生活方式:克氏锥虫的种群结构。
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The molecular epidemiology and phylogeography of Trypanosoma cruzi and parallel research on Leishmania: looking back and to the future.克氏锥虫的分子流行病学与系统地理学以及利什曼原虫的平行研究:回顾与展望
Parasitology. 2009 Oct;136(12):1509-28. doi: 10.1017/S0031182009990977. Epub 2009 Aug 20.
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Haplotype distribution of five nuclear genes based on network genealogies and Bayesian inference indicates that Trypanosoma cruzi hybrid strains are polyphyletic.基于网络系统发育和贝叶斯推断的五个核基因单倍型分布表明,克氏锥虫杂交菌株是多系的。
Genet Mol Res. 2009 Apr 28;8(2):458-76. doi: 10.4238/vol8-2gmr591.
9
Genome-scale multilocus microsatellite typing of Trypanosoma cruzi discrete typing unit I reveals phylogeographic structure and specific genotypes linked to human infection.克氏锥虫离散分型单元I的全基因组多位点微卫星分型揭示了系统地理结构以及与人类感染相关的特定基因型。
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10
Flow cytometric analysis and microsatellite genotyping reveal extensive DNA content variation in Trypanosoma cruzi populations and expose contrasts between natural and experimental hybrids.流式细胞术分析和微卫星基因分型揭示了克氏锥虫群体中广泛的 DNA 含量变异,并揭示了自然和实验杂种之间的差异。
Int J Parasitol. 2009 Oct;39(12):1305-17. doi: 10.1016/j.ijpara.2009.04.001. Epub 2009 Apr 22.

基于剪接先导基因间区的微卫星基序对不同地理区域和传播周期的克氏锥虫 I 基因型进行分析。

Trypanosoma cruzi I genotypes in different geographical regions and transmission cycles based on a microsatellite motif of the intergenic spacer of spliced-leader genes.

机构信息

Laboratorio de Biología Molecular de la Enfermedad de Chagas, INGEBI-CONICET, Buenos Aires, Argentina.

出版信息

Int J Parasitol. 2010 Dec;40(14):1599-607. doi: 10.1016/j.ijpara.2010.06.006. Epub 2010 Jul 27.

DOI:10.1016/j.ijpara.2010.06.006
PMID:20670628
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3081674/
Abstract

The intergenic region of spliced-leader (SL-IR) genes from 105 Trypanosoma cruzi I (Tc I) infected biological samples, culture isolates and stocks from 11 endemic countries, from Argentina to the USA were characterised, allowing identification of 76 genotypes with 54 polymorphic sites from 123 aligned sequences. On the basis of the microsatellite motif proposed by Herrera et al. (2007) to define four haplotypes in Colombia, we could classify these genotypes into four distinct Tc I SL-IR groups, three corresponding to the former haplotypes Ia (11 genotypes), Ib (11 genotypes) and Id (35 genotypes); and one novel group, Ie (19 genotypes). Genotypes harbouring the Tc Ic motif were not detected in our study. Tc Ia was associated with domestic cycles in southern and northern South America and sylvatic cycles in Central and North America. Tc Ib was found in all transmission cycles from Colombia. Tc Id was identified in all transmission cycles from Argentina and Colombia, including Chagas cardiomyopathy patients, sylvatic Brazilian samples and human cases from French Guiana, Panama and Venezuela. Tc Ie gathered five samples from domestic Triatoma infestans from northern Argentina, nine samples from wild Mepraia spinolai and Mepraia gajardoi and two chagasic patients from Chile and one from a Bolivian patient with chagasic reactivation. Mixed infections by Tc Ia+Tc Id, Tc Ia+Tc Ie and Tc Id+Tc Ie were detected in vector faeces and isolates from human and vector samples. In addition, Tc Ia and Tc Id were identified in different tissues from a heart transplanted Chagas cardiomyopathy patient with reactivation, denoting histotropism. Trypanosoma cruzi I SL-IR genotypes from parasites infecting Triatoma gerstaeckeri and Didelphis virginiana from USA, T. infestans from Paraguay, Rhodnius nasutus and Rhodnius neglectus from Brazil and M. spinolai and M. gajardoi from Chile are to our knowledge described for the first time.

摘要

从 105 个感染了克氏锥虫 I(Tc I)的生物样本、培养物和库存中,分析了来自 11 个流行国家(从阿根廷到美国)的拼接领导者(SL-IR)基因的基因间区,确定了 76 种基因型,在 123 个对齐序列中有 54 个多态性位点。基于 Herrera 等人(2007 年)提出的微卫星基序,将哥伦比亚的 4 种单倍型定义为,我们可以将这些基因型分为 4 个不同的 Tc I SL-IR 组,3 个对应于前单倍型 Ia(11 种基因型)、Ib(11 种基因型)和 Id(35 种基因型);一个新的组,Ie(19 种基因型)。在我们的研究中未检测到携带 Tc Ic 基序的基因型。Tc Ia 与南美洲南部和北部的家庭循环以及中美洲和北美洲的森林循环有关。在来自哥伦比亚的所有传播循环中都发现了 Tc Ib。在来自阿根廷和哥伦比亚的所有传播循环中都鉴定出了 Tc Id,包括克氏心肌病患者、来自巴西的野生样本和来自法属圭亚那、巴拿马和委内瑞拉的人类病例。在阿根廷北部的 5 个家庭间三锥虫 infestans 样本、9 个野生 Mepraia spinolai 和 Mepraia gajardoi 样本和来自智利的 2 个克氏病患者和 1 个来自玻利维亚的克氏病再激活患者的样本中发现了 Tc Ie。在媒介粪便和来自人类和媒介样本的分离物中检测到了 Tc Ia+Tc Id、Tc Ia+Tc Ie 和 Tc Id+Tc Ie 的混合感染。此外,在一名心脏移植的克氏心肌病再激活患者的不同组织中发现了 Tc Ia 和 Tc Id,表明了组织嗜性。来自感染美国的 Triatoma gerstaeckeri 和 Didelphis virginiana、巴拉圭的 T. infestans、巴西的 Rhodnius nasutus 和 Rhodnius neglectus 以及智利的 M. spinolai 和 M. gajardoi 的 Tc I SL-IR 基因型是我们首次描述的。