CIISA - Faculdade de Medicina Veterinária, Universidade Técnica de Lisboa, Avenida da Universidade Técnica, 1300-477 Lisboa, Portugal.
J Struct Biol. 2010 Dec;172(3):353-62. doi: 10.1016/j.jsb.2010.07.009. Epub 2010 Aug 1.
In general, plant cell wall degrading enzymes are modular proteins containing catalytic domains linked to one or more non-catalytic carbohydrate-binding modules (CBMs). Xyn10B from Clostridium thermocellum is a typical modular enzyme containing an N-terminal family 22 CBM (CBM22-1), a family 10 glycoside hydrolase catalytic domain (GH10), a second CBM22 (CBM22-2), a dockerin sequence and a C-terminal family 1 carbohydrate esterase (CE1) catalytic domain. The structure of the N-terminal bi-modular CBM22-1-GH10 component of Xyn10B has been determined using a SeMet derivative by SAD to 2.5Å. The data was extended to 2.0Å for the non-SeMet mutant complexed with xylohexaose. CBM22-1-GH10 is a 60kDa protein with an E337A mutation to render the GH10 subunit inactive. Three of the six xylose residues of xylohexaose are shown to be bound in the inactivated GH10 substrate binding cleft, with the other three sugars presumably disordered in the solvent channel. The protein is a dimer in the asymmetric unit with extensive surface contacts between the two GH10 modules and between the CBM22-1 and GH10 modules. Residues from helix H4 of the GH10 module provide the major contacts by fitting into the minor groove of the CBM22-1 module. The orientation of CBM22-1 is such that it would allow the substrate to be loosely bound and subsequently delivered to the active site in a processive manner.
一般来说,植物细胞壁降解酶是含有催化结构域的模块化蛋白,这些结构域与一个或多个非催化碳水化合物结合模块(CBMs)相连。来自嗜热梭菌(Clostridium thermocellum)的 Xyn10B 是一种典型的模块化酶,包含一个 N 端的家族 22 CBM(CBM22-1)、一个家族 10 糖苷水解酶催化结构域(GH10)、第二个 CBM22(CBM22-2)、一个 dockerin 序列和一个 C 端家族 1 碳水化合物酯酶(CE1)催化结构域。使用 SAD 方法对 SeMet 衍生物进行结构测定,得到了 Xyn10B 的 N 端双模块化 CBM22-1-GH10 组件的结构,分辨率达到 2.5Å。对于与木六糖复合的非 SeMet 突变体,数据扩展到 2.0Å。CBM22-1-GH10 是一个 60kDa 的蛋白质,E337A 突变使 GH10 亚基失活。木六糖的六个木糖残基中有三个被固定在失活的 GH10 底物结合裂隙中,其余三个糖可能在溶剂通道中无序。该蛋白质在不对称单位中形成二聚体,两个 GH10 模块之间以及 CBM22-1 和 GH10 模块之间存在广泛的表面接触。GH10 模块的 H4 螺旋的残基通过与 CBM22-1 模块的小沟结合提供主要的接触。CBM22-1 的取向使其能够松散地结合底物,并随后以连续的方式将其递送至活性位点。